Gluconacetobacter diazotrophicus PA1 5 (Brazil): GDI3225
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Entry
GDI3225 CDS
T00631
Symbol
deaD
Name
(GenBank) putative cold-shock DEAD box protein A
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gdi
Gluconacetobacter diazotrophicus PA1 5 (Brazil)
Pathway
gdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GDI3225 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gdi03019
]
GDI3225 (deaD)
Enzymes [BR:
gdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GDI3225 (deaD)
Messenger RNA biogenesis [BR:
gdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GDI3225 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
AAA_22
Helicase_RecD
CHASE8
YbbR
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
CAP57168
UniProt:
A9H0S9
LinkDB
All DBs
Position
complement(3316432..3317703)
Genome browser
AA seq
423 aa
AA seq
DB search
MTTFADLQLAEPLLRALNEEGYTTPTPIQAGAIPHLLAGRDLLGLAQTGTGKTAAFALPI
LQRLLTHHRRANPKGARVLVLAPTRELASQIDESFKSYARHMRLSHTVIFGGVGQGRQVE
AMRRGVDVLVAAPGRLLDLMGQGHIDLSGLEVLVLDEADRMLDMGFVRDIRRIVAELPRD
RQTLLFSATMPKSIADLAHGLLRDPATVQVTPPSSTVDRIRQAVMFVDTDNKRAALQLLV
DSPKVERAVVFTLMKHEANKVAAFLNDHGIIAEAIHGNKSQGARERAMAGFRSGAVKVLV
ATDIAARGIDVDDVTHVFNYDLPNVPESYVHRIGRTARAGRDGWAVSLCDAEQRAWLRDI
EKAIGKKIPVVQEHPYHSEAAENSTLRPPVLGGGGGRGRGGGGGGRHQQRQGGGHRGGAR
RVA
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgaccacatttgccgaccttcagcttgccgaaccgttgctgcgtgcgctgaatgaggaa
gggtacaccacccccacccccattcaggccggtgccatcccgcacctgctggccggtcgt
gacctgctgggcctggcgcagaccggaaccggcaagacggcggccttcgccctgccgatc
ctgcagcggctgctgacccatcatcgccgcgccaaccccaagggcgcgcgcgtcctggtc
ctggcgccgacgcgcgaactggcgtcgcagatcgacgagagcttcaaatcctacgcccgc
catatgcgcctgagccatacggtgatcttcggcggcgtcggccaggggcggcaggtcgag
gccatgcgccgcggcgtcgacgtgctggtcgcggccccgggccgcctgctggacctgatg
ggccaggggcatatcgacctgtcgggcctggaagtgctggtgctggacgaggccgaccgg
atgctggacatgggtttcgtccgcgacatccgccgcatcgtcgcggaactgccgcgcgac
cggcagacgctgctgttctccgccaccatgcccaagagcatcgccgacctggcccacggc
ctgctgcgcgatccggcgaccgtccaggtcacgccgccgtccagcacggtcgatcgtatc
cgccaggcggtgatgttcgtcgataccgacaacaagcgcgcggcgctgcaactgctggtg
gactcgcccaaggtcgagcgcgccgtggtgttcaccctgatgaagcatgaggcgaacaag
gtcgctgcattcctgaacgaccacggcatcatcgccgaggcgattcacggcaacaagtcg
cagggcgcgcgcgaacgcgcgatggcgggcttccgctccggcgcggtcaaggtgctggtg
gcgaccgacatcgcggcgcgcggcatcgacgtcgacgacgtgacgcatgtcttcaactac
gacctgccgaacgtcccggaaagctatgtgcaccgcatcggccgcacggcgcgcgccggg
cgcgacggctgggcggtgtcgctgtgcgatgccgagcagcgggcgtggctgcgcgacatc
gaaaaggcgatcggcaagaagattccggtggtgcaggaacatccctaccactccgaagcc
gccgagaattccaccctgcgcccgccggtgctgggcggcggtggcggccgtggccggggc
ggcggcggtggcggacgccaccagcagcgccagggtggcggtcatcgcggcggggcacgc
cgcgtcgcctga
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