Gluconacetobacter diazotrophicus PA1 5 (Brazil): GDI3335
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Entry
GDI3335 CDS
T00631
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor rpoD (Sigma-A)
KO
K03086
RNA polymerase primary sigma factor
Organism
gdi
Gluconacetobacter diazotrophicus PA1 5 (Brazil)
Pathway
gdi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
gdi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GDI3335 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gdi03021
]
GDI3335 (rpoD)
Transcription machinery [BR:
gdi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GDI3335 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF4795
Motif
Other DBs
NCBI-ProteinID:
CAP57278
UniProt:
A9H1N5
LinkDB
All DBs
Position
complement(3426606..3428576)
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AA seq
656 aa
AA seq
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MRIGQAMATKTAAGSEATAGDQDNDTTLLDTQSGAVKRLIARGKERGYITFDELNAVLPQ
DQMSSEQIEDVMAVLSEMGIQVVENEDNDDSEANREEKAEEADTEGEEAGGAAGNVDTES
LGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRDEMIGGLCESPLTFRAIISWHER
LKAGEMLLRDIVDLEAMQSGGAEAEAGAEGGEQEDGSFDAAPESEDGEEGDSAGLSLSAL
EEKLKPEILAQFEEIEELYSRLQKLQSKRLETLTSGAEMSDKSEKSYEKLREELVGKVQQ
VHLHNTRIEVLVQHLKEIFQRLNGLEGRMLRLAESTKVSREDFLIKYRGSELDPGWMDMV
SALPGKAWKNFVAKHSASVLDLRGQVASLSQETGLPVGEFRRVYATVSRGERDSARAKKE
MIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA
ITRSIADQARTIRIPVHMIETINKLVRTSRQMLHEIGREPAPEELAEKLGMPLEKVRKVL
KIAKEPISLETPIGDEEDSHLGDFIEDKTAVIPLDAAIQTNLREATTRVLSSLTPREERV
LRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLDDN
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
ttgaggatagggcaggcgatggcgacaaagacagccgcgggttcggaagcgactgctggc
gatcaggacaacgacaccactctgctggatacccaatccggagccgtcaagagactgatc
gcacggggcaaggaacgggggtacatcaccttcgacgagctgaacgccgtcctgccccag
gatcagatgtcgtcggagcagatcgaggatgtgatggcggtcctgtccgaaatgggcatc
caggtcgtcgagaacgaggataacgacgacagcgaggccaatcgcgaggagaaggccgag
gaggccgacaccgagggcgaggaagccgggggtgccgcgggcaacgtcgataccgagagc
ctgggccgtaccgacgacccggtgcgcatgtacctgcgcgagatggggtccgtcgaactg
ctgtcgcgcgagggcgaaatcgccatcgccaagcggatcgaggccggccgcgacgagatg
atcggcggcctgtgcgaaagcccgctgaccttccgcgccatcatttcgtggcacgagcgc
ctgaaggcgggcgagatgctgctgcgcgacatcgtggacctggaggccatgcagtccggc
ggcgccgaagccgaggccggcgccgagggcggcgagcaggaagacggcagcttcgacgcg
gcccccgagagcgaggacggcgaggaaggcgacagcgccggcctgtcgctgtccgcgctg
gaagaaaagctgaagcccgagatcctggcgcagttcgaggaaatcgaggaactgtattcc
cggctgcagaagctgcagtcgaagcggctggagaccctgacctcgggcgccgagatgtcg
gacaagtccgagaaatcgtacgagaagctgcgcgaggaactggtgggcaaggtgcagcag
gtccacctgcacaacacccgcatcgaggtgctggtgcagcacctgaaggaaatcttccag
cggctgaacgggctggaagggcgcatgctgcgcctggccgagagcaccaaggtctcgcgc
gaggacttcctgatcaagtatcgcggcagcgagctggacccgggctggatggacatggtg
tccgccctgccgggcaaggcgtggaagaatttcgtcgccaagcattcggcgtcggtgctg
gacctgcgcggccaggtcgcatccctgtcgcaggaaaccggcctgccggtcggcgaattc
cgccgcgtctacgccaccgtgtcgcgcggcgagcgcgattcggcccgcgcgaagaaggag
atgatcgaggcgaacctgcgcctggtgatctcgatcgccaagaaatataccaatcgcggg
ttgcagttcctggacctgatccaggagggcaatatcggcctgatgaaggcggtggataag
ttcgaatatcgccggggctacaagttctcgacctatgccacgtggtggatccgccaggcg
atcacccggtcgatcgccgaccaggcccgcacgatccgcatcccggtccatatgatcgag
accatcaacaagctggtccgcacgtcgcgccagatgctgcatgagatcggacgcgagccc
gcgcccgaggaactggccgaaaagctgggcatgccgctggagaaggtgcgcaaggtcctg
aagatcgccaaggaaccgatctcgctggaaacgccgatcggtgacgaggaagacagccac
ctgggcgatttcatcgaggacaagacggcggtcatcccgctggacgccgcgatccagacc
aacctgcgcgaagccacgacgcgggtcctgtcctcgctgaccccgcgtgaggaacgcgtg
ctgcgcatgcgcttcggcatcggcatgaacaccgaccacaccctggaagaggtgggccag
cagttcaacgtgacgcgcgagcgcatccgccagatcgaggcgaaggcgttgcgcaagctg
aagcacccgagccgcagccgcaagctgcgctcgttcctggacgacaactga
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