Gluconacetobacter diazotrophicus PA1 5 (Brazil): GDI3410
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Entry
GDI3410 CDS
T00631
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
gdi
Gluconacetobacter diazotrophicus PA1 5 (Brazil)
Pathway
gdi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gdi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GDI3410 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gdi03021
]
GDI3410 (rpoB)
03400 DNA repair and recombination proteins [BR:
gdi03400
]
GDI3410 (rpoB)
Enzymes [BR:
gdi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GDI3410 (rpoB)
Transcription machinery [BR:
gdi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GDI3410 (rpoB)
DNA repair and recombination proteins [BR:
gdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GDI3410 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
CsrA
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
CAP57353
UniProt:
A9H3S2
LinkDB
All DBs
Position
complement(3506955..3511127)
Genome browser
AA seq
1390 aa
AA seq
DB search
MNAMTKSFTGRKRIRKSFGRIPEIAPMPNLIDVQRASYEAFLQMNVSPDSRTQTGLQEVF
RSVFPINDFAGRGRLEFVNYELEEPKYDVEECIQRGLTFAAPLKVVLRLIVWDVDEDTGS
RSIRDIKEQPVYMGDMPLMTDNGTFIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKFL
FAARVIPYRGSWLDFEFDSKDLIYVRIDRKRKLPVTTLLYALEGASSAAARAAKVAEGGD
VDALEIRGMDADEILGYFYNQVVFTKGPKGWARPFDAESFRGLKLLEPLVDAQSGEVVAE
ADAKLTARMVRKIAETTKEVLVGPAGLIGRYVAHDLVNMETGEIYAEAGEELTEARLEAL
EEAGVDQLPTLAVDASNGPWIRNTLTVDKNTSREDALTDIYRVMRPGEPPTPETAEAMFS
GLFFDADRYDLSAVGRVKMNMRLGLDAPDTIRVLRKEDILRTVKIMCELKDGRGAIDDID
NLGNRRVRSVGELMENQYRVGLLRMERAIRERMGSVDIDTVMPHDLINAKPAAAAVREFF
GSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEG
PNIGLINSLATYAKVNKYGFIETPYRLVREGVLQDGWKYLSAMEEEKLIVAQADAKQDSH
GKLTDELVSVRRGGDFRLVKPEEVTACDVSPKQLVSVAAALIPFLENDDANRALMGSNMQ
RQAVPLVRSDAPLVGTGMEAAVAHDSGATIVAKRGGIIDQIDGARIVVRATDEAGATQGV
DIYRLRKYMRSNQSTCINQRPLVRVGDRVRGGDIIADGPSTELGELALGRNVLVAFMPWN
GYNFEDSILISERIARDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALRNLDEA
GIVYVGAEVNPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLKLPPGTTGTI
VDVRVFSRRGVDKDERAMAIERAEIERLAKDRDDERAIQERSFYNRLRERLVGQVSGTGF
KGLRSGTEITEEVLAEHPRGAWRNITVASDPVMVELEVLRREFDAAVARIQARFESKVEK
LQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVVSRVVPVEDMPFLEDGTPVD
LVLNPLGVPSRMNVGQILETHLGWACANIGRGIGELVDDYQRTGEKKQELLGRLKTVYGD
QVYDDAIVDLPNDQLVELANNLRKGVPIATPVFDGASIPDIEAMLESAGVNKSGQSQLID
GRTGEPFERRTTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEME
VWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVREQDDFEAGIPESFNVLIKELKSLG
LNVDLEQSND
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcgatgaccaaatcgttcacgggacgcaagcgcatccgcaagagcttcgggcgg
atacccgaaatcgctccgatgcccaatctgatcgacgtgcagcgcgccagctacgaggcg
ttcctgcagatgaacgtgtcacccgacagccggacgcagaccggcctgcaggaagtgttc
cgttcggtcttcccgatcaatgatttcgccggccggggccgcctcgaattcgtcaattac
gaactcgaggaaccgaaatacgacgtcgaggaatgcatccagcgcggcctgaccttcgcg
gcgccgctgaaggtcgtactgcgcctgatcgtctgggacgtggacgaggataccggctcg
cgctcgatccgcgacatcaaggaacagcccgtctatatgggcgacatgccgctgatgacc
gacaacggcacgttcatcatcaacgggaccgagcgcgtcatcgtcagccagatgcaccgt
agccccggcgtcttcttcgatcacgacaagggcaagacccattcctcgggcaagttcctg
ttcgccgcgcgcgtcatcccctatcgcgggtcgtggctggacttcgaattcgacagcaag
gacctgatctacgtccgcatcgaccgcaagcggaagctgccggtcaccacgctgctctac
gcgctggagggtgcttcctccgccgccgcccgcgccgccaaggtggccgagggcggggac
gtcgacgcgctggaaatccgcggcatggatgccgacgaaatcctgggctatttctacaat
caggtcgtcttcacgaagggcccgaagggctgggcgcgtccgttcgacgccgagtcgttc
cgtggcctgaagctgctggaaccgctggtggacgcccagagcggcgaggtggtggccgag
gccgacgccaagctgacggcccgcatggtgcgcaagatcgccgagacgaccaaggaagtc
ctggtcggtcccgccggcctgatcggccgctacgtcgcccatgacctggtcaacatggaa
accggcgagatctatgccgaagccggcgaggaactgaccgaggcccgtctggaggcgctg
gaagaagcgggtgtggaccagttgccgacgctggccgtcgatgcgtcgaacggtccgtgg
atccgcaacacgctgacggtggacaagaacacgtcgcgcgaggacgcgctgaccgacatc
tatcgcgtcatgcgccctggcgagccgccgacccccgagaccgccgaagccatgttctcc
ggcctgttcttcgatgcggaccgctatgacctgtcggcggtcggccgggtgaagatgaac
atgcgcctgggcctggacgccccggacacgatccgcgtgctgcgcaaggaagacatcctg
cgcaccgtcaagatcatgtgcgagctgaaggacggccgcggcgcgatcgacgacatcgac
aacctgggcaaccgtcgcgtccgctcggtcggcgagctgatggaaaaccagtatcgcgtc
ggcctgctgcgcatggaacgcgcgatccgcgagcgcatgggctcggtcgatatcgacacc
gtgatgccgcacgacctgatcaacgccaagccggcggcggcggcggtgcgcgaattcttc
ggttcgtcgcagctcagccagttcatggaccagaccaacccgctgtccgaagtcacgcac
aagcgtcgcctctcggccctcgggccgggcggcctgacgcgcgagcgcgcgggcttcgag
gtgcgtgacgtccatccgacccattacggccgcatctgcccgatcgaaacgccggaaggc
ccgaatatcggcctgatcaactcgctggcgacctacgccaaggtgaacaagtacggcttc
atcgaaacgccgtaccgcctggtgcgcgagggcgtgctgcaggacggctggaaatacctc
tccgccatggaagaggaaaagctgatcgtcgcccaggcggacgcgaagcaggacagccac
ggcaagctgacggacgaactggtctcggtccgccgtggcggcgacttccgcctggtgaag
cccgaggaagtgacggcctgcgacgtctcgcccaagcagctcgtctcggtcgccgcggcg
ctgatcccgttcctggaaaacgacgacgccaaccgcgcgctgatgggctcgaacatgcag
cgccaggcggtgccgctggtccgctctgacgcgccgctggtcggcacgggcatggaagcg
gcggtcgcccatgattcgggtgcgaccatcgtggccaagcgcggcggcatcatcgaccag
atcgacggcgcgcgcatcgtggttcgcgcgacggacgaggccggggcgacccagggcgtc
gatatctaccgcctgcgcaaatacatgcggtcgaaccagtctacctgcatcaaccagcgt
ccgctggtccgcgtgggcgaccgggtgcgcggcggcgacatcatcgccgacggtccgtcg
accgaactgggcgaactggcgctgggccggaacgtgctggtcgcgttcatgccgtggaac
gggtacaacttcgaagattcgatcctgatttccgagcggatcgcccgcgatgacgtcttt
acctcgatccatatcgaggaattcgaggtcatggcccgcgacaccaagctgggccaggaa
gaaatcacccgcgacatccccaatgtcggcgaggaagcgctgcgcaacctcgacgaggcg
ggcatcgtctatgtcggcgccgaggtgaatccgggcgacatcctggtcggcaaggtcacg
ccgaagggcgaaagcccgatgacgccggaagagaagctgctgcgcgccatcttcggcgaa
aaggcgtccgacgtccgcgacacgtcgctgaagctgcccccgggcacgaccggcaccatc
gtcgatgtgcgcgtcttctcgcgtcgcggcgtggacaaggacgagcgcgcgatggcgatc
gagcgcgccgagatcgaacgtctggccaaggaccgcgacgacgagcgcgcgatccaggaa
cgctcgttctacaaccggctgcgcgagcgtctggtgggccaggtctccggcaccggcttc
aagggcctgcgttcgggcaccgagatcaccgaggaggtgctggccgagcatccgcgcggc
gcgtggcggaacatcaccgtcgcctccgatccggtgatggtggaactggaagtgctgcgc
cgcgaattcgacgcggcggtggcgcgcatccaggcccgcttcgaaagcaaggtcgagaag
ctgcagcgcggtgacgagctgccgccgggcgtgatgaagatggtcaaggtcttcgtcgcg
gtgaagcgcaagctgcagccgggcgacaagatggccggccgtcacggcaacaagggtgtc
gtctcgcgcgtcgtcccggtcgaggacatgccgttcctcgaggacggcacgccggtcgac
ctggtgctgaacccgctgggcgtgccgtcgcgcatgaatgtcgggcagatcctggaaacc
catctgggctgggcctgcgccaatatcggccgcggcatcggcgaactggtcgacgactac
cagcgcaccggcgagaagaagcaggagctgctgggccgcctgaagacggtctatggcgac
caggtctatgacgacgccatcgtcgacctgccgaacgaccagctggtcgaactggccaac
aacctgcgcaagggcgtgccgatcgcgaccccggtgttcgacggcgcgtcgatcccggat
atcgaggcgatgctggaaagcgccggcgtcaacaagtcgggccagtcgcagctgatcgac
ggccgcaccggcgagccgttcgagcgtcggaccacggtcggctacatctacatgctgaag
ctgcatcacctggtcgacgacaagatccatgcccgttcgatcggtccgtactcgctggtg
acgcagcagcccctgggcggcaaggcccagttcggcggccagcgcttcggcgagatggag
gtctgggcgctggaggcgtacggcgcggcctatacattgcaggaaatgctgacggtgaag
tcggacgacgtgtccggccgcaccaaggtctacgaagcgatcgtgcgcgagcaggacgat
ttcgaggccggcattcccgagagcttcaacgtcctgatcaaggaactgaaatcgctcggc
ctgaacgtggatctggagcagagcaatgactga
DBGET
integrated database retrieval system
