Gluconacetobacter diazotrophicus PA1 5 (Brazil): GDI3698
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Entry
GDI3698 CDS
T00631
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gdi
Gluconacetobacter diazotrophicus PA1 5 (Brazil)
Pathway
gdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GDI3698
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gdi03019
]
GDI3698
Enzymes [BR:
gdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GDI3698
Messenger RNA biogenesis [BR:
gdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GDI3698
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_11
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
CAP57641
UniProt:
A9H7H6
LinkDB
All DBs
Position
complement(3773275..3774564)
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AA seq
429 aa
AA seq
DB search
MTMSMTFADLSLAPTLLRALAEEGYANPTPIQAQSIPMLLEGRDLLGMAQTGTGKTAAFA
LPLLHRLAMAPRPAPKGGARVLVLAPTRELVSQIADGFTSFGRHQPPSVTTIFGGVSQFH
QVNALKAGVDIIVAAPGRLLDLIDQGLCDLSQLEALVLDEADQMLDMGFARPIERIVATL
PKDRHTVLFSATMPKSIAALAESLLRDPAKVEIAPPSTTVDRIEQSVMFVDAADKKAALL
SMLRTPGIGQAVVFTLQKNIANEVCAFITEAGITAEALHGNKSQGQRERALDAFRAGTAQ
VLVATDIAARGIDVDTVTHVFNHDLPSLPESYVHRIGRTGRAGRNGFAITLCDAEQRAWL
RDVEREIGRALIVQDDHPWHSEAARNSTMRPPVLGGAPPKEVKPQKKRERKVWTEEEKNA
ARAAAARTA
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
ttgaccatgtccatgacatttgccgacctctccctggcgccgaccctgctgcgcgcactg
gccgaggaagggtatgccaacccgaccccgatccaggcccagtcgatcccgatgctgctg
gaaggccgcgacctgctgggcatggcccagaccggcacaggcaagaccgccgctttcgcg
ctgccgctgctgcatcgccttgccatggccccccgcccggcgcccaagggcggcgcccgc
gtcctggtcctcgcgcccacgcgcgaactggtctcccagatcgccgacggcttcacaagc
ttcggtcgccatcagccgcccagcgtgacgacgattttcggcggcgtcagtcagttccat
caggtcaacgcgctcaaggccggcgtcgacatcatcgtggccgcgccggggcggttgctg
gatctgatcgaccagggcctctgcgacctgtcgcaactcgaggcactggtgctggacgag
gccgaccagatgctcgacatgggcttcgccaggccgatcgagcgcatcgtcgcgacgctg
ccgaaggatcggcacacagtgctgttttcggcaacgatgccgaaatccatcgccgcgctg
gccgaaagcctgctgcgcgatccggcgaaggtcgagatcgccccgccctcgaccaccgtc
gaccggatcgagcagtcggtgatgttcgtcgatgccgccgacaagaaggcggcgctcctg
tccatgctgcggacgccgggaatcggccaggccgtggtcttcaccctgcagaagaacatc
gccaacgaagtctgcgccttcatcaccgaggccggcatcacggccgaagccctgcacggc
aacaagtcgcagggccagcgggagcgcgcgctggacgccttccgcgccggaaccgcgcag
gtgctggtggcgacggatatcgcggcgcgcggcatcgacgtcgatacggtgacgcatgtt
ttcaaccatgacctgccgagcctgccggaaagctacgtccaccgcatcggccgcaccggc
cgcgcgggccgcaacggcttcgccatcacgctctgcgatgccgagcagcgcgcctggctg
cgtgatgtggagcgggaaatcggtcgcgccctgatcgttcaggacgatcacccgtggcat
tccgaagcggcgcggaactcgaccatgcgcccccccgtgctgggcggcgcgccgcccaag
gaagtcaagccgcagaagaagcgcgagcgcaaggtctggaccgaggaagaaaagaacgcc
gcgcgggcagcagcagcccggacggcttga
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