Gluconacetobacter diazotrophicus PA1 5 (JGI): Gdia_1119
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Entry
Gdia_1119 CDS
T00798
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gdj
Gluconacetobacter diazotrophicus PA1 5 (JGI)
Pathway
gdj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gdj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Gdia_1119
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gdj03019
]
Gdia_1119
03009 Ribosome biogenesis [BR:
gdj03009
]
Gdia_1119
Enzymes [BR:
gdj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Gdia_1119
Messenger RNA biogenesis [BR:
gdj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Gdia_1119
Ribosome biogenesis [BR:
gdj03009
]
Prokaryotic type
rRNA helicases
Gdia_1119
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
ACI50902
LinkDB
All DBs
Position
1256919..1258709
Genome browser
AA seq
596 aa
AA seq
DB search
MPFPETHPALRRALDARGYEEPTPVQKAVLDVAADGRDLLVSAQTGSGKTVAFGLAMADT
LLGGAERFGPAGAPLAVIIAPTRELAMQVQRELSWLYAPAGARIVSCIGGMDARREARAL
EIGAHIVVGTPGRLCDHQSRGRLVLSELRVVVLDEADEMLDLGFRDELQQLLDAMPDTRR
TLLFSATIAKDIATLARRYQRDALRIDTLSGARQHADITYRAVMADPREIIPAVVNILRF
TDSPTAMVFCATRELVRHMQGALLERGFSSVALSGELGQSERTRAIESLRTGQARVCVAT
DVAARGIDIPALSLVVHASLPTDSATLLHRSGRTGRAGRKGVCALIVPVSMRRRAERLLT
MAKVSAEWTAVPTAEAIRAQDAERLLTDPILTEGAAPGDEDLVARLAENRSAEQLAAALL
QMYRARLPDPEDIRPLRVEAPRAPREGDYARRKEQGPREDHAPRGGPGAWFSMSVGRQDK
ADPKWLVPLICRLGGVRKNDIGAIRIADDHTLFEIATESAERFTACVAATDSDEVRISAA
KAPAGGPRGVSGERGYAPRKPAGKAGYPHGPRAGRAPAGATRGAPSSRKRAPSRAS
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgccgtttcccgagacccatcccgcccttcggcgcgcgctagacgcgcgcggctatgaa
gagccgacccccgtccagaaagccgtgctggatgtcgcggcggacggaagggacctgctg
gtgtcggcgcagaccggatcgggcaagacggtggcgttcggcctggcgatggccgacacg
ctgctgggcggggccgaacggttcggcccggccggcgccccgctggccgtcatcatcgcc
cccacccgcgaactggccatgcaggtccagcgcgaactgtcctggctgtacgccccggcc
ggcgcgcgcatcgtgtcgtgcatcggcggcatggatgcgcggcgcgaagcccgggccctg
gaaatcggcgcgcatatcgtcgtcggcacccccgggcggctgtgcgaccaccagtcgcgc
ggacgcctggtcctgtccgaactgcgtgtcgtggtgctggacgaagccgacgaaatgctg
gacctgggcttccgcgacgaattgcagcaattgctcgatgcgatgcccgacacgcggcgg
acgctgctgttttcggccaccatcgccaaggacatcgccaccctggcccgccgctaccag
cgcgacgcgctgcggatcgacacgctgtccggcgcccggcagcacgccgacatcacctat
cgcgccgtgatggccgacccgcgtgagatcattccggccgtcgtcaacatcctgcgcttc
accgacagcccgaccgccatggtgttctgcgccacgcgcgaactggtgcgccacatgcag
ggcgcgctgctggaacgcggcttttcgtcggtcgcgctgtcgggcgaactggggcagagc
gagcgtacccgcgcgatcgaaagcctgcgcaccgggcaggcgcgggtctgcgtcgccacc
gacgtcgcagcgcgcggcatcgacattcccgcgctcagcctggtggtgcatgccagcctg
ccgaccgacagcgccaccctgctgcatcgttcgggccgtaccggccgcgccgggcgcaag
ggcgtatgcgccctgatcgtgccggtttcgatgcgccggcgcgccgagcggctgctgacg
atggcgaaggtctcggccgaatggaccgccgtgccgaccgccgaggcgatccgcgcccag
gacgccgagcgcctgctgaccgacccgatcctgaccgagggcgcggccccgggcgacgaa
gacctggtcgcccgcctggccgaaaaccgcagcgccgagcagctggccgccgccctgctg
cagatgtaccgcgcccgcctgccggaccccgaggatatccgcccgctgcgcgtcgaggca
ccccgtgccccgcgcgagggcgattatgcccgccgcaaggaacagggcccccgcgaggac
catgcgccgcgtggcggaccgggtgcgtggttttccatgagcgtcggccgccaggacaag
gccgacccgaaatggctggtgccgctgatctgccgtctgggcggggtgcgcaagaacgat
atcggcgcgatccgcatcgccgacgaccacacgctattcgaaatcgcgacggaatcggcc
gagcgcttcaccgcctgcgtcgccgcgaccgattccgacgaggtgcggatcagcgcggcc
aaggccccggcgggcggcccccgtggcgtaagtggcgaacgcggctatgccccgcgcaag
cccgcgggcaaggccggctatccgcacggaccgcgtgccggtcgtgcaccggcgggcgcc
acgcgcggcgcgccctcgtcacgcaagcgggcgccgtcgcgcgcgtcgtag
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