Gluconacetobacter diazotrophicus PA1 5 (JGI): Gdia_2582
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Entry
Gdia_2582 CDS
T00798
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gdj
Gluconacetobacter diazotrophicus PA1 5 (JGI)
Pathway
gdj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gdj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Gdia_2582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gdj03019
]
Gdia_2582
Enzymes [BR:
gdj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Gdia_2582
Messenger RNA biogenesis [BR:
gdj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Gdia_2582
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_11
CMS1
Motif
Other DBs
NCBI-ProteinID:
ACI52325
LinkDB
All DBs
Position
complement(2833313..2834596)
Genome browser
AA seq
427 aa
AA seq
DB search
MSMTFADLSLAPTLLRALAEEGYASPTPIQAQSIPMLLEGRDLLGMAQTGTGKTAAFALP
LLHRLAMAPRPAPKGGARVLVLAPTRELVSQIADGFESFGRHQPPSVTTIFGGVSQVHQV
NALKAGVDIIVAAPGRLLDLIDQGLCDLSQLEALVLDEADQMLDMGFARPIERIVATLPK
DRHTVLFSATMPKSIATLAESLLRDPAKVEIAPPSTTVDRIEQSVMFVDAADKKAALLAM
LRTPGIGQAVVFTLQKNIANEVCAFITEAGITAEALHGNKSQGQRERALDAFRSGTAQVL
VATDIAARGIDVDTVTHVFNHDLPSLPESYVHRIGRTGRAGRNGFAITLCDAEQRAWLRD
VEREIGRALIVQDDHPWHSEAARNSTMRPPVLGGAPAKEVKPQKKRERKVWTEEEKNAAR
AAAARTA
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgacgtttgccgacctctccctggcgccgaccctgctgcgcgcactggccgag
gaagggtatgccagcccgacccccatccaggcccagtcgatcccgatgctgctggaaggc
cgcgacctgctgggcatggcccagaccggcacgggcaagaccgccgctttcgcattgccg
ctgctgcatcgccttgccatggccccccgcccggcgcccaagggcggcgcccgcgtcctg
gtcctcgcgcccacgcgcgaactggtctcccagatcgccgacggcttcgaaagcttcggt
cgccatcagccgcccagcgtgacgacgattttcggcggcgtcagtcaggtccaccaggtc
aacgcgctcaaggccggcgtcgacatcatcgtggccgcgccggggcggttgctggatctg
atcgaccagggcctctgcgacctgtcgcagctcgaggcactggtgctggacgaggccgac
cagatgctcgacatgggcttcgccaggccgatcgagcgcatcgtcgcgacgctgccgaag
gatcggcacacagtgctgttttcggcaacgatgccgaaatccatcgccacgctggccgaa
agcctgctgcgcgatccggcgaaggtcgagatcgccccgccctcgaccaccgtcgaccgg
atcgagcagtcggtgatgttcgtcgatgccgccgacaagaaggcggcgctcctggccatg
ctgcggacgccgggaatcggccaggccgtggtcttcaccctgcagaagaacatcgccaac
gaagtctgcgccttcatcaccgaggccggcatcacggccgaggccctgcacggcaacaaa
tcgcagggccagcgcgagcgcgcgctggacgccttccgctccggaaccgcgcaggtcctg
gtggcgacggatatcgcggcgcgcggcatcgacgtcgatacggtgacgcatgttttcaac
cacgacctgccgagcctgccggaaagctatgtccaccgcatcggccgcaccggccgcgcg
ggccgcaacggcttcgccatcacgctctgcgatgccgagcagcgcgcctggctgcgcgat
gtggagcgggaaatcggtcgcgccctgatcgttcaggacgatcacccgtggcattccgaa
gcggcgcggaactcgaccatgcgcccccccgtgctgggcggcgcgccggccaaggaagtc
aagccgcagaagaagcgcgagcgcaaggtctggaccgaggaagaaaagaacgccgcgcgg
gcagcagcagcccggacggcttga
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