Gluconacetobacter diazotrophicus PA1 5 (JGI): Gdia_3529
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Entry
Gdia_3529 CDS
T00798
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gdj
Gluconacetobacter diazotrophicus PA1 5 (JGI)
Pathway
gdj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gdj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Gdia_3529
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gdj03019
]
Gdia_3529
03400 DNA repair and recombination proteins [BR:
gdj03400
]
Gdia_3529
Enzymes [BR:
gdj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Gdia_3529
Messenger RNA biogenesis [BR:
gdj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Gdia_3529
DNA repair and recombination proteins [BR:
gdj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Gdia_3529
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
ACI53252
LinkDB
All DBs
Position
3861070..3862932
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AA seq
620 aa
AA seq
DB search
MTDHYPGDTLQAEPPGDAPRAILSRVFGFPDFRGLQEQAVGEVMAGRDCLVLMPTGGGKS
ICYQVPALSRPGTGLVISPLIALMDDQVAALRQVGVNAGALHSELEPEDAARIRADLVAG
RLDILYVSPERLLSPGMLDRLSRLTLSVIAIDEAHCISAWGHEFRPEYRALARLPEHFPG
VPRIALTATADPRTQADILDALAMPDARVLRASFHRPNLDIAVRPKISEMRQVLDVLGRH
AGEAAIVYCGSRNKTERVARSLRERDWPALPFHAGLSPIEKRAALARFRSGEPVVIVATI
AFGMGIDRPDVRTVVHLDMPSSPEAYYQQIGRAGRDGEKSETVLLYGGDDIARARHWLDQ
SSAPEAQKRIMSARLEAMIALTETTGCRTQALLACFGETLATACGHCDNCRNPVASFDGT
VDAQKVLSTIYRIGQKFGAVHVASILRGKTSDMAGRWGHDRLSVFGIGKDKPEQFWRGVI
RQLIARGIVQVSGEYNALALNEATARPILRGEEKLMLRVDPTDDLRAAGTRSNRAAGGDR
AAVSLPPEAEGPFAALRAWRLGEAREQEIPPYVIFHDAVLHDIAVERPATLDALARIKGV
GASKLDRYGAAVLQVLAGAD
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgacggatcactatccgggtgacacgcttcaggcggaaccgccgggcgacgcgccacgg
gcgatcctgtcacgcgtgttcggcttccccgacttccggggcctgcaggaacaggcggtc
ggcgaggtcatggccgggcgcgactgcctggtcctgatgccgaccggcggcggcaagagc
atctgctaccaggtgccggccctcagccgccccggcaccggcctggtgatttcaccgctg
atcgcgctgatggacgaccaggtcgcggcgttgcggcaggtcggcgtcaatgccggcgcg
ctgcattcggaactggagcccgaggacgcggcgcggattcgcgccgacctggtcgcgggc
cggctggatatcctctatgtctcgcccgagcgcctgctgtcgccggggatgctggaccgg
ctgtcgcggctgaccctgtcggtgatcgcgatcgacgaggcgcactgcatttcggcgtgg
gggcatgaattccggccggaataccgggcgctggcgcgcctgccggaacatttccccggt
gtgccgcgtatcgcgctgaccgcgaccgccgacccccgtacccaggccgatatcctcgac
gccctggcgatgccggatgcccgcgtgctgcgcgccagcttccaccggcccaacctggac
atcgccgtccggcccaagatttcggaaatgcgccaggtgctggacgtgctgggccgccac
gccggcgaggccgcgatcgtctattgcggcagccgcaacaagaccgaacgcgtcgcccga
tccttgcgcgagcgggactggcccgccctgccgttccatgccggcctgtcgccgatcgaa
aagcgggcggcgctggcgcggttccgctccggcgagccggtggtgatcgtggcgaccatc
gccttcggcatggggatcgaccggccggacgtgcgcacggtggtgcatctggacatgccg
tcctcgcccgaggcgtactaccagcagatcggccgcgccgggcgcgacggcgagaaatcc
gagaccgtcctgctgtatggcggcgacgacattgcccgggcgcggcactggctggaccag
tccagcgcgcccgaggcccagaagcggatcatgagcgcgcggctggaggcgatgatcgcc
ctgaccgagaccacgggctgccgcacccaggcgctgctggcctgtttcggtgagacgctg
gccacggcgtgcgggcattgcgacaattgccgcaatcccgtcgcctcgttcgacggcacg
gtggacgcgcagaaggtcctgtccacgatctatcgcatcggccagaaattcggcgccgtg
catgtggcctcgatcctgcggggcaagaccagcgacatggcggggcgctggggccatgac
cggttgagcgtgttcggcatcggcaaggacaagccggaacagttctggcgcggcgtcatc
cggcagttgatcgcccgtgggatcgtgcaggtttccggtgaatataacgccctggcgttg
aacgaggccaccgcccgtcccatcctgcgaggggaggaaaagctgatgctccgcgtcgac
cccaccgacgatctgcgggctgccgggacccggagcaaccgggcggccggcggcgaccgg
gcggccgtgtcgctgccgcccgaagccgagggaccgttcgccgccctgcgcgcctggcgc
ctgggcgaggcgcgcgaacaggaaattccgccctacgtgatcttccatgacgcggtgctg
cacgacatcgcggtggaacggccggcaacgctggacgcgctggcgcggatcaagggcgtg
ggggcatccaagctggatcgctatggcgcggcggtgctccaggtcctggccggggcggac
tag
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