Gluconacetobacter diazotrophicus PA1 5 (JGI): Gdia_3550
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Entry
Gdia_3550 CDS
T00798
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
gdj
Gluconacetobacter diazotrophicus PA1 5 (JGI)
Pathway
gdj03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gdj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Gdia_3550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gdj03400
]
Gdia_3550
Enzymes [BR:
gdj01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Gdia_3550
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Gdia_3550
DNA repair and recombination proteins [BR:
gdj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Gdia_3550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
ACI53273
UniProt:
A9HI30
LinkDB
All DBs
Position
3885807..3886667
Genome browser
AA seq
286 aa
AA seq
DB search
MPELPEVETVMRGMRLHLDGKTIARVAVRRADLRFPFPADLVARLEGATITGFARRAKYI
LIRLDTGDTLLLHLGMSGRVLLSLPGDAPVPDRHEHFFFETTDGTRCGLIDPRRFGAVDL
MPTAEERAHRLLARLGPEPLGNQFSQHWLQEVLARRRTSIKAALLDQTVVAGLGNIYVSE
ALFRAGIHPARLACTLDAAEDARLVQAIRAVLREAIAAGGSSLRDYVQPDGELGYFQHAW
RVYGRAGQGCPDCPGPPACHGVERLEQAGRSSFFCPLCQPPPGKVS
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgccggaactccctgaagtcgaaacagtgatgcgcgggatgcgattgcatctcgacggg
aagacgatcgcgcgggtcgcggtgcgtcgcgccgacctgcgtttcccctttcccgcggac
ctggtggcccggctggagggcgccacgatcaccggtttcgcccgacgggcgaaatatatc
ctgatccggctggatacgggcgataccctgctgctgcacctgggcatgtcggggcgggtc
ctgctgtcattgcccggcgacgcccccgtgcccgaccggcacgagcatttcttcttcgag
accacggacgggacgcggtgcggcctgatcgaccccaggcgcttcggcgcggtcgacctg
atgccgacggcggaggagcgagcacatcggctgctggcccgactcggtcccgaaccgctg
ggcaaccagttctcgcaacactggctgcaggaagtactggcccggcggcggacctccatc
aaggcggcgctgctggaccagacggtggtggcgggcctgggcaatatctatgtgtccgag
gcgctgttccgcgccggcatccatccggcacgcctggcctgcaccctggacgcggccgag
gacgcgcgcctggtccaggcgatccgcgccgtgctgcgcgaagcgatcgcagcgggcggg
tccagcctgcgcgactatgtccagccggatggggaactgggttatttccagcacgcgtgg
cgtgtctacggccgtgcggggcagggatgcccggattgtcccggtccccccgcatgccat
ggtgtggagcggctggaacaggccggacgctccagcttcttctgccccctgtgccagccc
ccgccgggcaaggtctcgtga
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