Geobacillus sp. 12AMOR1: GARCT_00257
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Entry
GARCT_00257 CDS
T03966
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gea
Geobacillus sp. 12AMOR1
Pathway
gea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GARCT_00257 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gea03019
]
GARCT_00257 (cshA)
03009 Ribosome biogenesis [BR:
gea03009
]
GARCT_00257 (cshA)
Enzymes [BR:
gea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GARCT_00257 (cshA)
Messenger RNA biogenesis [BR:
gea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GARCT_00257 (cshA)
Ribosome biogenesis [BR:
gea03009
]
Prokaryotic type
rRNA helicases
GARCT_00257 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
Helicase_RecD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AKM17605
LinkDB
All DBs
Position
246405..247808
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AA seq
467 aa
AA seq
DB search
MTTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPI
VEKVDVKNGAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIDRQIRALKKH
PHVIVGTPGRILDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLL
FSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAP
ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTK
RKMERMKPPTLDEALEGQQRIAIEKLLNVAETENLSFYKRAAEELLEEHDSVTLVAACLK
MLTREPDTTPVKLTEEPPLAVKREKKRGGRPDGSARGRTKKRRITAH
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
ttgacgacatttcaagaattaggattaagccaagaagtgatgaaagcgatcgagcggatg
gggtttgaagagacgaccccgattcaagcaaagacgattccgctcagtctgcaaaataaa
gacgtaatcggtcaagcgcaaaccggaactgggaaaacggcggcgtttggtattccgatt
gtggaaaaagtggacgtaaaaaacggcgccgttcaagcgctcgttgtcgcgccgacgcgg
gagctcgccatccaagtatcagaagagctgtataaaatcggcgcggtcaagcgcgtgcgc
gtcttgccgatttacggcggtcaagatatcgaccggcaaatccgcgctttgaaaaaacat
ccgcacgtcatcgtcggcacgccgggccgcatccttgaccatatcaaccgcggcacgctg
cgtcttgagcacgtgcataccgtcgtgctcgatgaggcggacgagatgctcaacatgggg
tttatcgaggacattgaagcgattttaagccatgtgccggccgagcggcagacgttgctg
ttctcggcgacgatgccggatccgatccgccgcattgccgagcgcttcatgaacgagccg
gaacttgtcaaagtgaaggcaaaggaaatgaccgtgccgaacattcaacagtactactta
gaagtgcacgagaaaaagaaatttgacattttgacgcggcttctcgatattcaggcgccg
gagctcgcgatcgtgttcggccgcacgaagcggcgcgtcgatgagcttgccgaggcgctc
aacttgcgcggctatgcggcggaaggcatccacggcgatttaagccaggcgaagcgcctg
tcggtgttgcgcaagtttaaagaaggatcgatcgaaattttagtcgcaaccgacgttgcc
gcgcgcggattggatatttccggcgtgacgcacgtatataacttcgacatcccgcaggat
ccggaaagctacgtccaccggatcgggcggacaggccgcgccgggaaaacgggtgtggcg
atgacgtttgtcacgccaagggagatcggccagctccaccatattgagcggacgacgaag
cggaaaatggaacggatgaagccgccgacgctcgatgaggcgctggaaggccaacagcgc
attgccattgagaagcttctcaatgtggcggaaacagaaaacttgtcgttttacaagcgg
gccgccgaggagctgctggaagagcatgattcggtgacgcttgtcgccgcctgcttgaaa
atgttgacgcgcgagccggatacaacgccggtaaaactgaccgaagagccgccattagcg
gtcaaacgggagaaaaaacggggcggccgcccggacggctccgcgcgcggacggacgaaa
aaacggcggattacggcgcattaa
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