Geobacillus sp. 12AMOR1: GARCT_00402
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Entry
GARCT_00402 CDS
T03966
Symbol
rlmCD_2
Name
(GenBank) 23S rRNA (uracil-C(5))-methyltransferase RlmCD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
gea
Geobacillus sp. 12AMOR1
Brite
KEGG Orthology (KO) [BR:
gea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gea03009
]
GARCT_00402 (rlmCD_2)
Enzymes [BR:
gea01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
GARCT_00402 (rlmCD_2)
Ribosome biogenesis [BR:
gea03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
GARCT_00402 (rlmCD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
MTS
TRM5-TYW2_MTfase
Methyltransf_15
PrmA
Methyltransf_11
Methyltransf_4
PCMT
Methyltransf_23
Ubie_methyltran
Cons_hypoth95
Motif
Other DBs
NCBI-ProteinID:
AKM17729
LinkDB
All DBs
Position
395257..396645
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AA seq
462 aa
AA seq
DB search
MTDSGKQSFITDIHQLDKKGIGQAVVWREEDGKRKKLKLAIPSTLPGEKVRVVVDEPKRR
RVQARLEEVIEPHPERLAPSCPHFDRCGGCVWQHWRYEGQLRHKTEHVKTLLKEHGFDPG
VVRDTIGMEHPWHYRNKMEFTFSPEGLLGLHEQGNFRQVISLETCLIAGEKIVKAAMEVA
RWARDHQLPGYHKDTHEGLLRHVMVRESFATGEVMVALFATEAPEGKLKEAAADLTERIT
KALPEVKSLLWLENRAWADRTQAEQTHVLAGRDFIYDELCGFRYRLWFDTFFQTNPVQAA
KLVELALEMGEPKPHEKMIDLFCGVGTFSLPFAKRVKALAGIEIVETSIESAKRNAKDNG
IDNTYFLARDARRGIDEVLEQFGRPELLLLDPPRSGAGGKVMRKIGRARPERVVYVSCNP
ETFASDITELVSFGYTLKTVQPVDMFPHTAHVECCALLVRGS
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
ttgacagacagcggaaaacaatcgttcattacggacattcatcagttggataaaaaagga
attggacaagccgtcgtttggcgtgaagaggacggaaagagaaagaagctcaaactcgcc
attccgtctacacttcccggtgagaaggtgcgagtcgttgtcgatgagccaaaacggcgc
agagttcaggcgcggttggaagaagtgattgagccgcatccggaacggcttgcgccttcg
tgtccgcactttgaccgctgcggcggctgtgtctggcagcactggcgctatgaagggcag
ctgcgccataaaacggagcatgtcaagacgctcttgaaagagcacggatttgaccctggc
gttgtccgcgatacgattggcatggaacatccgtggcattaccgcaataaaatggagttt
acgttctctcctgagggcctgcttggactgcacgagcaagggaatttccggcaagtgatt
tcgttggagacatgtctcattgccggcgagaagatcgtcaaagccgctatggaagtggcg
cgttgggcgcgcgatcaccagctgcctggttatcacaaagatacccacgaagggctgctt
cgccacgtcatggtgcgcgagtcgtttgcgacaggagaggtgatggtggcgctctttgcg
accgaggcgccggaagggaagttgaaagaagcggcggccgatttgacggagcggatcacg
aaggcgctcccggaagtgaaaagtttgctttggctcgagaatcgggcgtgggcggaccgc
acccaagcggaacaaacccatgtgttggccggacgtgatttcatttacgatgaattgtgc
gggttccgctaccgtctttggtttgatacgtttttccaaacgaacccggtgcaggcggcc
aaattggttgaactggcgttggagatgggcgagcccaagccccatgagaaaatgatcgat
ctcttctgcggagtcggcacgttttccttgccgttcgccaagcgggtgaaggcgttggcg
ggcattgaaattgtggaaacgtcgatcgagtcggcgaaacgaaacgcgaaagacaacggc
attgataatacgtactttttggctcgggatgcaagacgcgggattgatgaagtgttggaa
cagttcgggcggccggagctgctgcttttggatcctccacgttcgggggcgggcgggaag
gtgatgcgcaaaatcggccgggcgcggccggagcgggttgtgtatgtctcgtgcaatccg
gagacgtttgcgtcagacattacggagctagtctcgttcggctatacattgaaaaccgtc
cagccggtggacatgtttccgcatacggcccatgtcgagtgctgtgcgttgcttgttcgg
ggatcatga
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