Geobacillus sp. 12AMOR1: GARCT_00660
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Entry
GARCT_00660 CDS
T03966
Symbol
sbcC
Name
(GenBank) Nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
gea
Geobacillus sp. 12AMOR1
Brite
KEGG Orthology (KO) [BR:
gea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gea03400
]
GARCT_00660 (sbcC)
DNA repair and recombination proteins [BR:
gea03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GARCT_00660 (sbcC)
Archaeal homologous recombinant proteins
GARCT_00660 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
ABC_tran
AAA_18
MMR_HSR1
AAA_22
ATP-synt_ab
Motif
Other DBs
NCBI-ProteinID:
AKM17962
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All DBs
Position
637982..641326
Genome browser
AA seq
1114 aa
AA seq
DB search
MKPISLTIAGLHSFREKQTIDFTALCDGGVFGIFGPTGSGKSTILDAITLALFGSVGRAA
NRTQAIINHAEKELFVSFTFELENAAGAKRYTVERSLKRADEWRTRSAVCRLIEHQAEPV
VLADKLSDVDKAVVQLLGLTMEDFTRAVVLPQGKFAEFLSLKGAERRQMLQRLFHLERYG
DELNKKLKERLAAAEQEWQKIEAEKAGLGDASKAALEQAEAEERELAALFAKRKKELEKI
EADVERARQLRAWQQEKEAVEAELSALRRREPEVRALEAKKGRAEQAERIWPYWEQYEQM
RLLQAAALQRQEAALRQLEAAKAHYEDAVRRYEQARQEKARREPELLVQMERLRQAEQLE
RQMETLKAELAALHEEWNRLADREKAVQRQFEEAEAWYARGLARQQELKEELQRHAAALA
GKDEIERACEEKRRIEQTASALARVDVQLQQKEAAWRQTERERAERERRAAAAGARLHQL
FQLVEQTHHSVCSRQQDIEKRLHVLRRQIEAEQQRIEEAQTAELAAVLAERLRPGEPCPV
CGSREHPHPSARPQTVASGRLSELEQERQRCEQDLQTLFSFKAQLEQLAALAASHGTPPV
QAAVRPAGETVDMAVEVRALGQDVIERKEAVYRALSQWNEAEAARREAENACRWAAADIE
ALQAEKQRLEEEKQQLERQWREAHPSFSLETIAVVYEQLREQEKMWRDVQKRLEDSVPFL
EEKQRAKEQAAEERRRLEAERVRLESLMSAKQELWKEYERQRREKAGPGPAGVQLREAEA
EWRRLQNGEQQAYDEWQRAQQQYQATESEAKAAKQACEEAARREEEALARWRRALAGTVF
ADAEEVRMSRAAKAQCDEWDEAIRLYWRQVEQAEHRRAQLAAVIGEEAVSAEQWEMMQQV
YNELKAHTEMMTEQLGAVRGKVAELRKKHVRFVELEARQATLGRQIERYKQLQTLLRGNS
FVEFMAEEQLEQVTIMASERLQQLTRHRYALELDSQGGFLIRDDANGGVRRPVSTLSGGE
TFLTSLSLALALSAQIQLRGEYPLRFFFLDEGFGTLDAELLDTVVSALEKLHTQQLAVGV
ISHVQEIRNRLPRRLIVEPAEPSGPGTRVRLEWM
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atgaagccaatttccttgacgatcgccgggcttcatagctttcgtgaaaaacaaacgatc
gattttacggccctttgcgacggcggcgtattcggcatttttggaccgaccggaagcggc
aaatcgacgattttggatgccatcacgctcgcgctgttcggaagtgtcggacgggcggcc
aatcggacacaagcgatcatcaaccacgctgaaaaggaactgttcgtttcctttacgttc
gaattggaaaatgccgctggggcaaaacggtacacggtggaacgcagtttgaaaagggcg
gatgaatggcggacgcggagcgccgtctgccggttgatcgaacatcaggccgagccggtc
gtgctcgcggacaagctctctgatgtagacaaggcggtcgtacagctgcttggtttgact
atggaagattttacccgcgctgtcgttttgccgcaagggaagtttgccgagtttttatcc
ctcaaaggggcggagcgccggcaaatgctgcagcgcctgttccatcttgaacgatacggt
gacgagttgaataaaaagttaaaagagcggctcgccgccgcggagcaggaatggcaaaaa
atcgaagcggaaaaagcggggctcggcgatgcttcgaaagcggcgcttgagcaggcagaa
gccgaggagcgggagcttgcggcgctgtttgccaagcgcaaaaaagagcttgagaaaatc
gaggcagacgtcgaacgggcgaggcagcttcgggcgtggcagcaggaaaaagaagcggtt
gaagcggaattatcggcattgcgccggcgagagcccgaagtgcgggcgcttgaagcgaaa
aaagggcgggccgagcaggcggagcgcatttggccgtactgggagcagtacgaacagatg
cgcctcctgcaggccgcggcgctgcagcggcaggaggcggcgttgcgacagttggaggcg
gccaaagcccactatgaggatgccgtgcgccgctatgagcaggcgcggcaggaaaaagcg
cggcgcgagccggagctgttggtgcaaatggagcggctgcggcaggcggagcagctcgaa
cggcaaatggaaacactcaaggcggagctcgccgccctccatgaggagtggaaccgcttg
gcggaccgggaaaaagcggtgcagcgtcagttcgaggaagcggaggcctggtacgcgcgc
ggcttggcgcgccaacaggagctgaaagaagagttgcagcggcatgccgctgcgctcgct
ggcaaagacgaaatagagcgcgcctgcgaagagaagcggcgcattgagcaaacggcgtcc
gctctcgcccgcgtcgatgtgcagctccagcaaaaggaagctgcctggcgccaaaccgaa
cgagagcgggctgagcgggagcgccgcgccgccgctgccggcgcccgccttcatcaactg
tttcagcttgttgaacaaacgcaccattccgtctgcagccggcaacaagatatcgaaaag
cggctgcatgttttgcggcgacagatcgaggcggagcagcaacggatcgaagaggcgcag
acggccgaactggcagcggttctggctgagcggctccgtcccggtgaaccgtgcccggtg
tgcggctcgcgtgagcacccgcatccgtccgccaggccgcagacggtagcctctggtcgg
ttgtctgagctcgagcaagagcggcagcgttgcgaacaagatttgcagacactgttctca
ttcaaggcgcagcttgagcagcttgccgcgctggcggccagccacgggacaccccctgtt
caggcggctgtccgcccggcaggcgaaaccgtcgatatggccgttgaagtccgggcgctc
gggcaggatgtcattgaacgaaaggaagcggtttaccgggcgttgtcgcagtggaatgag
gcggaagcggcgcggcgtgaagcggaaaacgcctgccgatgggcggcagcggatatcgaa
gcgctgcaagcggagaaacagcgccttgaagaggagaaacagcagcttgaacggcagtgg
cgcgaggcgcatccttccttttcactggaaacgatcgcggtggtttacgagcagctgcgc
gaacaagagaaaatgtggcgtgatgtacaaaaacggcttgaagacagcgttccattttta
gaagaaaaacaaagagcaaaagaacaggcggctgaggagcgtcgccggcttgaggcggag
cgggtgcgcctcgaatcgcttatgagcgccaaacaggagctgtggaaagaatatgagcgg
caacggcgcgagaaggccggacctggcccggcaggtgtgcagcttcgggaagcggaagcc
gaatggcgccggctgcaaaacggcgaacagcaggcgtacgatgaatggcagcgcgcccaa
cagcaataccaggcgacagaaagtgaggcgaaggcagcgaagcaggcgtgcgaggaagcg
gcccgccgcgaggaagaagcgctcgctcgctggcgccgcgccttggccggcactgtgttc
gctgatgctgaagaagtgcgaatgtcgagggcggcaaaagcgcaatgtgatgaatgggac
gaagccatccgcctttactggcgccaggtcgagcaggctgagcaccgccgcgcccagctg
gcggctgtcatcggcgaagaagcggtgagcgctgaacaatgggagatgatgcagcaagta
tacaacgagttgaaagcgcacaccgagatgatgaccgagcagcttggcgcggtgcgcgga
aaagtggcggagctgagaaaaaaacatgtccgttttgttgaattggaggcgaggcaggca
actctcggccgccaaattgagcggtacaaacagctgcaaacgttgcttcgcggcaacagt
tttgtcgaatttatggcggaagagcaactcgaacaggtgaccatcatggcgtctgagcgg
ctacagcagttgacgcgccatcgctatgcgcttgagctcgattcgcaaggcgggtttttg
attcgcgatgatgccaacgggggggtgcggcggccggtgtcgacgctgtccggcggggaa
acgtttttgacatcgctgtcgttggcgctggcgctgtcggcgcaaattcagttgcgcggt
gaatatccgctccggtttttctttttggacgaggggtttggcacattggatgccgagctg
ctcgatacggtcgtttctgctttggaaaagttgcatacgcagcagctggctgtcggcgtc
atcagccatgtccaagagattcgcaaccggctgccgcgccgtctcattgtcgagccggcg
gagccgtccggccccggcacgcgcgtccggcttgaatggatgtaa
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