Geobacillus sp. 12AMOR1: GARCT_01219
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Entry
GARCT_01219 CDS
T03966
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
gea
Geobacillus sp. 12AMOR1
Brite
KEGG Orthology (KO) [BR:
gea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gea03032
]
GARCT_01219 (topA)
03400 DNA repair and recombination proteins [BR:
gea03400
]
GARCT_01219 (topA)
Enzymes [BR:
gea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
GARCT_01219 (topA)
DNA replication proteins [BR:
gea03032
]
Prokaryotic type
DNA Topoisomerases
GARCT_01219 (topA)
DNA repair and recombination proteins [BR:
gea03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GARCT_01219 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
zf_Rg
Auto_anti-p27
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
AKM18513
LinkDB
All DBs
Position
1196251..1198326
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AA seq
691 aa
AA seq
DB search
MSDYLVIVESPTKAKTIERYLGKKYTVKASMGHVRDLPKSQMGVDIDRGYALKYITIRGK
GQVIKELKTAAKKAKKVFLAADPDREGEAIAWHLAHMLDLDIHSDCRVVFHEITKDAIQQ
SFQQPRSINMNLVDAQQARRVLDRLVGYNISPLLWKKVKKGLSAGRVQSVALRLIIDREK
EIRQFQPEEYWTIQATFQKGDEAFAASFYGMDGEKRELKTEADVKAVLARLSGTAFTVKT
VTKRERKRSPVPPFTTSSLQQEAARKLNFRTKKTMMIAQQLYEGIDLGSEGTVGLITYMR
TDSTRVAETAQQEAAAYIEAKFGAAYVSQEKRKEKNSANAQDAHEAIRPTSAFRDPENVK
PYLTRDQFRLYKLIWERFIASQMAAAVLDTMSVELENNGVVFRASGSTVKFPGFMKVYIE
GTDDQAEEQDRLLPDLTEGETVKSEAVDPKQHFTQPPPRYTEARLVKTLEELGIGRPSTY
APTLDTIQKRNYVVLENKRFVPTELGEIVVELMLEFFPEIIDVEFTAKMEKELDEIEEGK
VEWIKVVDEFYREFEKRLKVAEKEMREVEIKDEPAGIDCDICGSPMVYKMGRFGKFIACS
NFPECRHTKPIVKQIGVKCPKCHEGEIVERNTKKKRIFYGCSRFPECDFVSWDKPLARPC
PKCGGLLVEKKLKKGVQVQCTACDYEEQPET
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtcagactacttggttatcgtcgaatcgccaacgaaagcgaagacgatcgagcggtac
ttaggaaaaaaatatacggtcaaagcttcgatgggacacgttcgcgatttgccaaaaagc
cagatgggcgttgatatagaccgcggctacgcattgaaatatattacgattcgcggcaaa
ggccaggtgattaaggagctgaaaacggcggccaaaaaggcgaaaaaagtgtttcttgcc
gccgacccggatcgggaaggggaagcgatcgcctggcatttggcccacatgctcgattta
gacattcactcagactgccgcgtcgtttttcatgaaattacaaaggatgccattcagcag
tcgttccagcagccgcgctccatcaacatgaatcttgtcgacgcccaacaggcgcggcgc
gtgctcgaccgcctcgtcggctacaacatcagcccgctcttatggaaaaaagtcaaaaaa
gggttgagcgccggccgcgtccaatcggttgcgctccgtctgatcatcgaccgggaaaaa
gaaattcgccagtttcagccggaagaatattggacgattcaagcgacgtttcaaaaaggg
gatgaggcgtttgcggcttcgttttacgggatggacggcgaaaagcgggaattaaaaacg
gaagcggacgtcaaagcggtgctcgcccgcttgagcgggaccgcgtttacggtgaaaacg
gtgacaaagcgggagcgaaaacgcagcccggtgcccccatttaccacatcgtcactgcag
caggaggcggcgcgcaagctgaatttccgcacgaaaaagacgatgatgatcgcccagcag
ctgtacgaagggatcgacctcggcagcgaagggacggtcggtttgatcacgtatatgcgc
accgattcaacgcgcgtcgccgagacggcgcagcaagaggcggcagcgtacattgaggcc
aaattcggcgcggcgtacgtcagtcaggagaagcggaaagaaaagaacagcgcgaacgcc
caagacgcccacgaggcgattcgcccgacctcggcgtttcgcgatccggagaacgtgaag
ccatatttgacgcgcgaccagtttcggttgtataaactcatttgggaacggtttatcgcc
agccagatggcggcggcggtgctcgacacaatgagcgtcgagctggaaaacaacggcgtc
gtgttccgcgcgagcggctcgacggtgaagtttccggggtttatgaaagtgtatattgaa
gggacggacgatcaagcggaagagcaagaccggcttcttccggacttgacggaaggggag
acggtcaagagcgaggcggtcgacccgaagcagcactttacccagccgccgccgcgctat
acggaagcgcgccttgtcaaaacgttggaggagctcggcatcggccgcccatcgacctac
gccccgacgctcgatacgatccaaaaacgcaactacgtcgtgttggaaaacaaacggttc
gtcccgacggagctcggggaaatcgttgtcgagctgatgctagagtttttcccggaaatc
atcgatgtcgagtttacggcgaaaatggaaaaagagctggatgaaattgaagagggaaaa
gtggaatggatcaaagtcgtcgatgagttttaccgcgagttcgagaaaaggttgaaagtg
gcggaaaaagaaatgcgcgaagtggagattaaagacgagccggccgggatcgactgcgac
atatgcggcagcccgatggtgtacaaaatgggccgcttcggcaagtttatcgcctgctcc
aattttcccgaatgccgccatacgaagccgatcgtcaaacaaatcggcgtcaaatgcccg
aagtgccatgaaggagagattgtcgagcgcaacacgaagaaaaagcggatcttttacggt
tgcagccgctttccggagtgcgattttgtctcctgggataagccgcttgcccgcccatgc
ccgaaatgcggcggcctgcttgtcgagaaaaagttaaaaaaaggcgtgcaagtgcaatgc
acggcctgcgattatgaagaacagccggaaacataa
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