KEGG   Geobacillus sp. 12AMOR1: GARCT_01422
Entry
GARCT_01422       CDS       T03966                                 
Symbol
recD
Name
(GenBank) RecBCD enzyme subunit RecD
  KO
K10742  DNA replication ATP-dependent helicase/nuclease Dna2 [EC:5.6.2.3 3.1.-.-]
Organism
gea  Geobacillus sp. 12AMOR1
Pathway
gea03030  DNA replication
Brite
KEGG Orthology (KO) [BR:gea00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    GARCT_01422 (recD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gea03032]
    GARCT_01422 (recD)
Enzymes [BR:gea01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     GARCT_01422 (recD)
DNA replication proteins [BR:gea03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    GARCT_01422 (recD)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     GARCT_01422 (recD)
SSDB
Motif
Pfam: AAA_11 AAA_12 AAA_19 AAA_30 PDDEXK_1 UvrD-helicase PhoH UvrD_C_2 AAA_22 DEAD SLFN-g3_helicase AAA AAA_16 ResIII HAUS5 Zot PSF3_N AAA_24 cobW
Other DBs
NCBI-ProteinID: AKM18714
LinkDB
Position
1409870..1413706
AA seq 1278 aa
MIQWINKLTNLSAGIGQYVLERDRCMLYVSPAKIASYFYHECERNFYFQSLAKERRSELD
VPEELFEQPAVHESVLRRGVEWEEEVITTYLAGQVQMGERDPGAPISHCYLDGEETIREL
KQPSKRYLYQPTLIAPPRFYERYGLDRDDIHFAACRPDLIECIPGQNGFVFRIIDIKSSD
VLKISHRVQTALYALMLSSVLEEHGVKGSVDLREAGIWTYKTEQPQLTDIGQLLPFLEQF
LASELTALAGKQLDELFWHLDYRCEWCPFYDYCFDKARKQSHISLVPYLSSHASRFIRER
QLPETIDEFRQLLERQETRHVLKQNAGLARQLRRLEAQLEAIAEEKVVPYDQAVTHMPIW
EDIRLILTAQRDPLTGKIAAASLYRVGGTDVFGTGSEMHHVIAGSLEECDAVGRTFADAL
DRLLQTVHDYNRDREWRSQKSVQVYVIDNYEWDNVQQLLQALLFDPDYNEKAVRLLSYFH
SSSLASASDHPSEMVPLPVVVLTTAVSQLFALPAHVAYRLEDLSRYIAAYHDSPFLYSAS
ERFSFRLTNAMKLDVLHDAWQTGDTETRQAVEKELSRRLWAAHSIIQGIRAWAESVHPSP
LMVWPEKFAFPHSADYRDPLVSKLAFMARYEALLNYLDIRQKRLLPLSERLENGVTLHVT
YLGGDRFRLNNRQALEAIDLKASWLLTECNEEGEKAQQTFPDHKYASEWKPPQWANVYFV
RIRAIEDNGKTAELELELPKWLDRFPLVEGEEYWLSLRHADFTTSRVLQALQQLDKDNHR
ILDLIRDPIRYRKTFRPNWDAEEVKALLRQSRLTKSQRQAFLHFLRHTLTLVWGPPGTGK
THFIAVALRLLMPIYEKQGRRLAILVSGFTHAAIENVLRKIQELAPRRSVHIAKLGEIQT
ENAKGIAEVADRDLPRWLGNGGHRVLGATLYGIQRAYEKDCLEEFDVVILDEASQIRVAD
SLLALRHVKKAGRLLIVGDHFQLPPIIQGAYAAAEGEPHLFDSIFGLLFDADVEKRYTRQ
LTDNFRMNEALCRYPAERIYSSQYTAFTRQIAEQTLALADAPTADEWVEAAIDPDYPLVV
CTYDGVYGAQENEAEARWVASIAKVLRERLLDSEEKRYDDSSEGDQAFWRRGLFIISPHR
AQIRAIRRELEHQGLRPPFFVDTVDKMQGQEVDAAIISYGVADPELAVMEGEFIYSLNRL
NVSLTRARKKAILFLSRQLMSPPLQVIGNEEYREGVNFMVGLEQYALRHGEAQTFMVDGV
ALQMYRVSRPKMEKMDTL
NT seq 3837 nt   +upstreamnt  +downstreamnt
atgatacaatggataaacaaactgacaaatctcagtgcgggcatcggccagtacgtttta
gaaagggatcgatgtatgctttacgtttctcctgccaaaatcgcaagctatttttatcac
gagtgcgagcggaatttttattttcagtcgttggcgaaagaacggcgcagcgagctcgat
gtgccggaagagctgtttgagcagcctgcggttcatgagagcgtgctgcgccgaggggtt
gagtgggaagaggaagtgattacgacctatttggccggccaagtgcagatgggagagcga
gatcctggcgcaccgatttcccactgctatttggatggagaggagacgatccgcgagctg
aagcagccgagcaagcgctatttataccagccgacattgatcgcgccgccgcgcttttac
gaacggtacgggttggatcgggacgacatccattttgcggcgtgtcgtccggatttgatt
gagtgcattccggggcaaaacggctttgtgttccgcatcatcgacatcaaatcatcagat
gtgttaaagatttcccaccgcgtgcaaacggcgctgtacgcgttgatgttgtcctcggtg
ttagaggagcacggtgttaagggcagcgtcgatttgcgcgaagccgggatatggacgtac
aaaaccgagcagccgcagctgacagatatcggacagctgcttccgtttcttgagcagttt
ttggctagcgaattgacggcgctggctgggaagcaacttgatgagctgttttggcatttg
gattatcgctgtgaatggtgcccgttctatgattactgtttcgacaaagcgcggaaacag
tcgcatatttccctcgttccgtacttatcgagtcatgcgtcccgctttatccgcgagcgg
cagcttccggagacgatcgatgagtttcgccaacttcttgagcgtcaagaaacgagacac
gtcctaaaacaaaacgctggattggcgcgtcaacttcggcggcttgaagcgcagcttgag
gcgattgcggaggaaaaggtcgttccgtatgaccaggcggtgacgcatatgccgatatgg
gaagacatccgtctgattctcaccgcgcaacgcgatccgttgacggggaagattgcggcg
gcatcgttgtaccgtgttggtggaacagacgtgtttggaacgggatcggaaatgcatcat
gttattgctggttctctggaagaatgcgacgcggtcggccgaacgtttgccgatgcgctg
gaccgcctgcttcagacggtgcacgattacaaccgggatcgagagtggcggtcgcaaaaa
tcggtgcaggtgtatgtcatcgacaactatgaatgggacaatgtgcagcagctacttcaa
gcgcttttgttcgatccagactataacgaaaaagctgttcggctgctgtcgtattttcat
agcagctcactagcaagtgccagcgaccacccaagcgaaatggttccgcttcctgtcgtt
gtgctgacaacggctgtgagccagctgttcgccttgccggcgcatgtcgcgtaccgtctt
gaagacttgtcgcggtatattgcggcctaccatgattcgccgtttctgtactcggcgagc
gagcgcttttcgttccgcttgacaaacgccatgaaactggatgtgctgcacgacgcctgg
caaacaggggacacggaaacacggcaagcggtcgagaaggagctgagccgccgcctttgg
gctgctcacagcatcattcaaggaatccgtgcgtgggccgagagcgtccatccttcgccg
cttatggtctggccggaaaaatttgcgtttcctcattcggctgattaccgtgatccgctt
gtgtccaagctggcgtttatggcgcgctatgaggcgctattaaactacttggatattcgc
caaaagcgcctgcttccgctttcggagcggcttgagaacggagtgacgcttcatgtcacg
taccttggcggcgatcggttccgattgaacaaccgccaggcgcttgaagcgatcgatcta
aaggcgagctggcttttgacggagtgcaatgaggaaggagaaaaggcgcaacagacgttt
cctgatcataagtacgccagtgaatggaagccgccccaatgggccaatgtctattttgtc
cgcattcgcgccatcgaagataatggcaagacagctgaactcgagctcgagttgcccaaa
tggctcgatcggttcccgcttgtggaaggagaggagtattggctgtcgcttcggcatgcg
gattttaccacctcgcgcgtcttgcaggcgttgcaacagttggataaggacaatcatcgc
atcttggacttgattcgcgatccgattcgctatcggaaaacgtttcgtcccaactgggat
gcagaggaagtcaaggcgcttctccgccaaagcaggctgacgaaaagccagcgtcaggcg
tttctccactttctccgccatacgttgacgctcgtctgggggccgcctggcaccgggaaa
acgcattttattgccgttgctcttcggctgcttatgccgatttatgaaaagcaggggcgc
aggcttgccattcttgtttcgggtttcacccatgcggcgatcgaaaacgttctgcgcaaa
attcaggagcttgcgccgcggcgcagcgtccatatcgcgaaacttggtgagattcagacg
gaaaacgccaaaggaatcgccgaggtggcggaccgtgaccttccccgatggctgggcaac
ggcgggcatcgggtgcttggcgccacgctgtacggcattcaaagggcgtatgaaaaagac
tgtctagaagagtttgacgtcgtcattctggatgaggcgtcgcaaatccgcgtggccgat
tcactgttggcgctgcgccatgtcaaaaaagcaggcaggctgcttatcgtcggcgaccat
ttccagctgccgccaatcattcaaggggcgtatgcggccgcggaaggggagccgcacctg
ttcgactcgattttcggcctgctgtttgacgcggatgtggagaagcggtatacccgccaa
ctgacggacaatttccgcatgaacgaggcgctttgccgctacccggccgagcggatttac
agctcccagtataccgcgttcacccgccagattgccgaacaaacgttggcgctcgccgat
gccccaactgccgatgaatgggtggaagcagcgatcgaccctgactatccgcttgtcgtc
tgcacgtatgacggcgtgtacggtgcccaagaaaacgaggcggaagcgcgctgggtggcg
agcatcgcgaaggtgttgcgggaacggcttctcgacagcgaggaaaaacggtacgatgac
tcatcagaaggcgaccaagcgttttggcgccgcgggctgtttatcatctcgccgcatcgg
gcgcaaatccgcgccattcgccgtgagcttgaacaccaaggactgcgtccgccgtttttc
gtcgatacggttgataaaatgcaagggcaagaagtggatgcggcgatcatcagctacggc
gtcgccgatccggaactggctgtgatggaaggggagttcatctacagtttgaaccgcctc
aacgtgtcgctcacgcgggcgcggaaaaaggcgatcctcttcctctcgcgccaactgatg
tcgccgccgcttcaggtgatcggcaacgaggaataccgtgaaggagtcaactttatggtt
gggcttgagcagtacgctttacgtcatggggaagcgcaaacgtttatggtcgacggtgtt
gcgctgcaaatgtaccgagtcagtcgtccgaagatggaaaagatggacactctatga

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