Geobacter sp. M18: GM18_0434
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Entry
GM18_0434 CDS
T01421
Name
(GenBank) apurinic endonuclease Apn1
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
geb
Geobacter sp. M18
Pathway
geb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
geb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GM18_0434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
geb03400
]
GM18_0434
Enzymes [BR:
geb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
GM18_0434
DNA repair and recombination proteins [BR:
geb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
GM18_0434
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
ADW11917
LinkDB
All DBs
Position
complement(543933..544784)
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AA seq
283 aa
AA seq
DB search
MDLLGAHVSISGGIHNAIDRGVASGCGVIQLFTQNANQWRGKAVSDADAGLFRDKFAASG
LKSAMSHDIYLINLAAAPGDVKDKSLIAFREELERCAKLGIDKVVMHPGSHNGDGEETGI
RRVCEAFDQLFAEVPQFTGKVLLENTAGQGSNLGYRFEHLKAIMEGCSYPTRFGVCFDTC
HAFASGYPIADREGYRRTFDEFDAALGIGRLMAFHLNDSKKGLGCKVDRHEHIGAGTLGL
EPFRFILNDPHFALVPKVIETPKGDNDEMDAVNLKLLRSLIES
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atggatttgctgggcgcacacgtctccatctcgggaggcatccataacgccatcgaccgg
ggggtcgcctcgggttgcggcgtcatccaactgttcacccagaacgccaaccagtggcgc
ggcaaggccgtctccgatgcggacgccgggctcttccgggacaagttcgcggcaagcggc
ctgaagagcgccatgagccacgacatctacctgatcaacctggccgccgcccccggcgac
gtgaaggacaaaagcctgatcgcgttccgggaggagctggagcgctgcgcgaagctcggc
atcgacaaggtcgtcatgcatcccggctcgcacaacggcgatggcgaggagaccggcatc
cggcgcgtctgcgaggcctttgaccagctcttcgccgaggtgccgcagttcaccggcaag
gtgctcctggaaaacacggccggccaggggagcaacctgggctacaggttcgagcacttg
aaggcgatcatggaagggtgctcctacccgacacgcttcggcgtctgcttcgacacctgc
cacgccttcgcctccggctatccgatcgcggacagggaggggtaccgcaggaccttcgac
gagttcgacgcagcgctcggcatcgggaggctgatggccttccacctgaacgactccaag
aaggggctggggtgcaaagtggaccgccacgagcacatcggcgcggggacgctggggctg
gaacccttccgcttcatcctgaacgacccgcacttcgccctggtcccgaaggtcatagag
accccgaagggggataacgacgagatggacgcggtgaacctgaaactgctgcggagcctg
atcgaaagctga
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