Geobacter sp. M18: GM18_0714
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Entry
GM18_0714 CDS
T01421
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
geb
Geobacter sp. M18
Pathway
geb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
geb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GM18_0714
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
geb03400
]
GM18_0714
Enzymes [BR:
geb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
GM18_0714
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
GM18_0714
DNA repair and recombination proteins [BR:
geb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
GM18_0714
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
Ribosomal_S13
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
ADW12195
UniProt:
E8WSN7
LinkDB
All DBs
Position
874105..874890
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AA seq
261 aa
AA seq
DB search
MPELPDLTVYAENLGKALTGKKVDRVEYHQRGKLNVSAAELSRALAGAEVTGVQRGGKQV
AFHFGNGALLRVHLMLTGGFVLTSPSALDRLQHPVLTVAFSDGSALALTDEKGWASVALN
PGEEKDAPDALALSAEQLQQLCQRKPRTLIKPLLLDQALIGGIGNAYADEILWAARISPK
SPAGKLPPEAVKALADAIPAVLKDAITELRKRHPDMVSGEYREFLKVHRPELKVSPTGAK
IIKENVQSKRTYYTDEQRLYQ
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atgccagagctcccggacctgactgtgtacgcagaaaatctgggcaaggcgttgaccggc
aagaaggtcgacagggtggagtatcaccagaggggaaagctgaacgtttctgcggcagaa
ctctcccgggcgctcgccggcgccgaggtgaccggcgtgcagaggggtgggaaacaggtc
gcctttcacttcggcaacggggcgttgctgcgggtgcatctgatgctgaccggcggcttc
gtcttgaccagcccatcggctctcgaccggctgcagcacccggtgctgactgtcgccttc
agcgacgggagcgcgcttgcgttgaccgatgaaaaggggtgggcgagcgtagccctcaat
cccggcgaggaaaaggacgcgcccgacgccctggccctcagcgccgaacaactgcagcag
ctctgccagaggaagccccggacgctcatcaagccgctgctgctcgatcaggcactgata
ggcggcatcggcaacgcctacgccgatgaaatcctctgggccgcgcgcatctcccccaag
tcgccggcgggcaaacttccccccgaagcggtaaaggccctggccgacgccatccccgcg
gtgctcaaggacgccatcaccgagctgaggaagaggcacccggacatggtatcgggggaa
taccgcgaattcctgaaggtgcaccgaccggaactgaaggtgtcgcccaccggagcgaag
atcatcaaagagaacgtccagtccaagcgcacctactacaccgacgagcagcggctgtac
cagtaa
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