Geobacter sp. M18: GM18_0825
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Entry
GM18_0825 CDS
T01421
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
geb
Geobacter sp. M18
Pathway
geb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
geb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GM18_0825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
geb03021
]
GM18_0825
03400 DNA repair and recombination proteins [BR:
geb03400
]
GM18_0825
Enzymes [BR:
geb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GM18_0825
Transcription machinery [BR:
geb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GM18_0825
DNA repair and recombination proteins [BR:
geb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GM18_0825
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
ADW12304
LinkDB
All DBs
Position
998029..1002144
Genome browser
AA seq
1371 aa
AA seq
DB search
MAYSIANNPLLRKNFAKIHKIIDIPNLIDIQKNSYKRFLQLDTPVDARKNSGLEAVFRSV
FPIRDFSDTASLEYVSYSLGAPKYDVEECHQRGMTFAAPMKVKVRLVVWDVSKDPGTRSI
RDIKEQEVYFGEIPLMTDNGTFIINGTERVIVSQLHRSPGVFYDHDKGKTHSSGKVLYSA
RVIPYRGSWLDFEFDHKDILYVRIDRRRKMPATVLLKALGYSNDALINYFYKSEEVKVGG
NGAMTKLVDAELLSSQKATADIVDPGTAEVILKANRKFTKAALRKMAEHGIKEIPIAEEE
VVGKVASHDIYDPATGEILVECNEEITPAKLEEMIQKGITSFQVLFIDNLHVTSSFRDTI
LIDKIGSTDEALIEIYRRLRPGDPPTLKSALVLFENLFFNAERYDLSAVGRLKLNYKLGV
DVPLDCMTLTREDILEVVRYLIELKNGKGNIDDIDHLGNRRVRAVGELLENQYRIGLVRM
ERAIKERMSLQEVENLMPHDLINSKPVSAVVKEFFGSSQLSQFMDQTNPLSEVTHKRRLS
ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIASLSTYARINEHGFVETPY
RVVKEGKVTDEVRFFSALEEEGHAIAQANAEMDETGRFMADYISARKSGEFVLVGRDELE
LMDVAPMQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRADSPLVGTGMERVVARD
SGVSSVARHNGVVESVDASRIVVKIDEDQYDATGTGVDIYNLIKFARSNQNTCINQRPVV
KVGDHVKAGDIIADGPSTDMGELALGQNVLVAFMPWGGYNYEDSILISERLVKDDRYTSI
HIEEFEAVARDTKLGKEEITSDIPNLGEETLKDLDESGIIRIGAEVRPGDILVGKITPKG
ETQLSPEEKLLRAIFGEKAGDVRDTSLRVPPGVEGTVIGAKIFSRKGADKDARTEIIEKA
EEQRLRKDEQDEIRIIRDSAIGKLKKLLVGKTAAVKIEGTDGKVLIPKGAAITEEMLKSF
SMDRWDEISIADDDTVDEKVAQTLATLNQQIDIIKYVFDDKVQKLRRGDDLPPGVIKMVK
VYIAIKRKLQVGDKMAGRHGNKGVVSRILPEEDMPYMEDGRPVEIVLNPLGVPSRMNVGQ
ILETHLGWAARGLGWKIEEFLEKNSPHDEIKRFLKGTYHDPDMHRFIDKLEGEELINVAK
RLKRGVPMASPVFEGASEESIQAMMKQAGFETTGQVTLYDGKSGDKFMHKVTVGIMYVLK
LHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVK
SDDVAGRTRMYEAIVKGKHTLEPGLPESFNVLIKELQSLGLDVELLEGDED
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atggcttattcaatcgcgaataaccccctgttgcgcaagaacttcgccaagatccacaag
atcatcgacataccgaacctcatcgacatccagaaaaattcctacaagagattcctccaa
ctcgacacccccgtagacgcacgcaagaactccggcctggaggccgtgttccgcagcgta
ttcccgatcagggacttcagcgataccgcctcgcttgagtacgtttcgtattcgctgggc
gcgccgaagtacgacgtggaagagtgccaccagcgcgggatgaccttcgcggccccgatg
aaggtgaaagtgaggctggtagtctgggatgtgtcgaaggaccccggtacccgttcgatc
cgtgacatcaaggagcaggaggtttatttcggcgaaatcccgctgatgaccgacaacggg
acctttatcataaacggcaccgagcgcgtcatcgtgagccagctgcaccgctcgccgggc
gtgttctacgatcacgacaaggggaagacccattcctccggcaaggtgctctactcggcc
cgcgtgatcccgtaccgcggttcgtggcttgactttgaatttgaccataaggacatcctt
tatgttcgcatagacaggcgccgcaagatgccggccaccgtgctcctgaaggcccttggt
tactccaacgacgccctcatcaactacttctacaagtccgaggaagtgaaggtcggcggg
aacggcgccatgaccaagctggtcgacgccgagctcctctccagccagaaggccaccgcg
gatatcgtggacccgggcaccgccgaggtcatcctcaaggcgaaccgcaagttcaccaag
gcggctctcaggaagatggccgagcacggcatcaaggagatcccgatcgccgaagaggaa
gtggtcggcaaggtcgcctcccacgacatctacgacccggctaccggcgagatcctcgtg
gagtgcaacgaggagatcaccccggcgaagctcgaggagatgatccagaaggggatcacc
tccttccaggtgctcttcatcgacaacctgcacgtcacctccagcttccgcgacaccatc
ctgatcgacaagatcggctccaccgacgaggcgctgatcgagatctacagacggctgcgt
ccgggcgatccgcccaccctgaagagcgcgctggtcctcttcgagaacctgttcttcaac
gcggagcgctacgacctctccgcagtcggccgcctgaagctcaactacaagctgggcgtg
gacgtgccgcttgactgcatgacgctcacccgcgaggacatcctcgaggtggtgcgttac
ctgatcgagctgaaaaacggcaaggggaacatcgacgacatcgaccacctgggcaaccgc
cgcgtgcgcgccgttggtgagcttctcgagaaccagtaccggatcggcctggtcaggatg
gagcgcgccatcaaggagcgcatgagcctgcaggaagtcgagaacctgatgccgcacgac
ctgatcaactccaagccggtttccgcggtggtcaaggagttcttcggttcctcgcagctc
tcccagttcatggaccagaccaacccgctctccgaggtcacgcacaagcgtcgtctctcg
gctcttggaccggggggcttgacccgcgagcgcgcgggcttcgaggtccgcgacgtacac
ccgacccactacggccgcgtctgcccgatcgagaccccggagggtccgaacatcggtctg
atcgcgtcgctctccacctacgcacggatcaacgagcacggcttcgtcgagaccccgtac
cgcgtggtcaaggaagggaaggtcaccgacgaggtgcgcttcttctccgctttggaggag
gaaggccacgccatcgcccaggccaacgccgagatggacgagaccggccgcttcatggcc
gactacatctccgccaggaagtccggcgagttcgtgctggtcggccgtgacgagctggaa
ctcatggacgtggccccgatgcagctggtatcggtcgctgcatcgctgatcccgttcctt
gagaacgacgacgcaaaccgcgcactcatgggttccaacatgcagcgccaggcggtgccg
cttctgcgcgccgactccccgctggtcggtaccggcatggagcgcgtcgtggcaagggac
tccggggtttcctcggtcgcccgccacaacggcgtcgtcgagagcgttgacgcatcgagg
atcgtcgtcaagatcgacgaggaccagtacgatgcgaccggcaccggcgtcgacatctac
aacctgatcaagttcgcccgttccaaccagaacacctgcatcaaccagaggccggtggtc
aaggtgggggaccacgtgaaggccggcgacatcatcgccgacggtccctcgaccgacatg
ggggagctggccctgggccagaacgtcctggtcgccttcatgccgtggggcggctacaac
tacgaggactccatcctcatctcggagcgcctggtaaaggacgaccgctacacctcgatc
cacatcgaggagttcgaggccgtggcccgcgacaccaagctcggcaaggaggagatcacc
tccgacatcccgaacctcggtgaagagaccctgaaggacctggacgagtccggcatcatc
aggatcggcgcggaagtccgcccgggagacatcctggtcggcaagatcactccgaagggc
gagacccagctctccccggaagagaaactcctgcgcgccatcttcggcgagaaggcgggc
gacgtgcgcgacacctcgctgcgcgtaccgccgggggtcgaggggaccgtcatcggcgcc
aagatcttctcgcgtaaaggcgccgacaaggacgcccgtaccgagatcatcgagaaggcc
gaggagcagcgcctcaggaaggacgagcaggacgagatccggatcatccgtgattcggct
atcggcaagctgaagaaactgctggtgggcaagaccgcagcggtgaagatcgaaggtacc
gacggcaaggtgctgatcccgaaaggggccgccatcaccgaggagatgctgaagtcgttc
tccatggaccgctgggacgagatctccatcgccgacgacgacaccgtcgacgagaaggtg
gcgcagaccctcgccaccctgaaccagcagatcgacatcatcaagtacgtcttcgatgac
aaggtgcagaagctgcgccgcggcgacgacctgccgccgggcgtcatcaagatggtcaag
gtatatatcgcgatcaagcgcaagctccaggtcggcgacaagatggcaggccgccacggt
aacaagggtgtcgtctccaggatcctccccgaggaggacatgccgtacatggaagacggc
cgtccggtcgagatcgtgctgaacccgctgggcgttccgtcccgtatgaacgtgggtcag
atccttgaaacacacctgggctgggcggcacgcggccttgggtggaagatcgaggagttc
ctggagaagaactcgccgcacgacgagatcaagcgcttcctgaaggggacctaccacgat
cccgacatgcatcgcttcatcgacaagctcgagggcgaggagctgatcaacgtggccaag
cgcctgaagcgcggcgttccgatggcctccccggttttcgagggggcgagcgaggagtcg
atccaggcgatgatgaagcaggccggtttcgagaccaccggccaggtcaccctgtacgac
ggcaagagcggcgacaagttcatgcacaaggtcaccgtcggcatcatgtacgtgctgaag
ctgcaccacctggtcgacgacaagatccacgcgaggagcatcggtccctactccctggtc
acccagcagccgctgggcggcaaggcgcagttcggcggtcagcggctcggggagatggag
gtctgggcgatggaggcctacggcgccgcttatgcgctgcaggagttcctcaccgtcaag
tccgacgacgtggccggccgcaccaggatgtacgaggcgatcgtcaaagggaagcacacc
ctggagccgggtctgccggagtcgttcaacgtcctcatcaaggaactccagtcccttggc
ctcgacgtggaactgctggaaggcgacgaagactag
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integrated database retrieval system
