Geobacter sp. M18: GM18_0826
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Entry
GM18_0826 CDS
T01421
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
geb
Geobacter sp. M18
Pathway
geb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
geb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GM18_0826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
geb03021
]
GM18_0826
03400 DNA repair and recombination proteins [BR:
geb03400
]
GM18_0826
Enzymes [BR:
geb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GM18_0826
Transcription machinery [BR:
geb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GM18_0826
DNA repair and recombination proteins [BR:
geb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GM18_0826
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ADW12305
LinkDB
All DBs
Position
1002256..1006401
Genome browser
AA seq
1381 aa
AA seq
DB search
MEDIFNFFDKPKDPLHFSSIKISISSPDKIRERSFGEVKKPETINYRTFKPERDGLFCAK
IFGPTKDYECNCGKYKRMKHRGIVCEKCGVEVIPSKVRRERLGHIDLATPVAHIWFLKSL
PSRIGNLMDITLKDLEKVLYFEAYVVTDPKETGLPFGTVYSEDQYQKALEEYNYGFEAGM
GAAAIRTCLTSMDLDQLSEQLRIEMQEATSEAKRKKTAKRLKVIEAFKNSGNKPEWMILE
CIPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELQAPEVIIRNEKRMLQ
EAVDALFDNGRRGRAIAGPNKRPLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGPE
LRLHQCGLPKKMALELFKPFIYNKLEERGFVTTIKSAKKMVEKEKPEVWDVLEEVIKEHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHLPLSVESQVET
RVLMMSTNNILSPAHGKPIIVPSQDMVLGIYYMTREKHFAQGDGKIFASPEEVAIAWDAG
EIHLQARIKVRMKNLPADEKPTLIDTTTGRVLLRDVLPDAVPYATINKVMTKKELSNLVD
VCYRLAGNKETVILADKLKSIGFRYAAKAGISISINDMVIPEGKPAIINRATEEVQEIQN
QYTEGLITDGERYNKVIDIWAKSTEDIAKEMLDNLSRDTISDPQGNEVKVPSFNAIHMMA
DSGARGSAQQIRQLAGMRGLMAKPSGEIIETPITANFREGLTVLQYFISTHGARKGLADT
ALKTANSGYLTRRLVDVAQDAIITEVDCGTIDGLTVSSLTEGGEVIEHIGDRILGRVALD
DILDPVTGDVLVAANMEIDETLVARIEAAGLEKVKIRSVLTCESRRGICAKCYGRDLARG
HLVNRGEAVGVIAAQSIGEPGTQLTMRTFHIGGTASRRAEQTSLETRNEGYAKFINLHYV
TNSEGHHIVMNRNGELAIVDETGREREKYGVVYGAKIKVSPEQKVTQGQSIAEWDPYTMP
ILTEISGRVKFGDVVEGVTMEEQVDEVTGLSRKVIIETRDSDKRPRITIKDESGKTAKIG
ESMARYYLPVGSNINAMEDTMVNAGDVIAKIPRETTKTKDITGGLPRVAELFEARKPKDF
AVITEIDGVVAFGKDAKGKRKVIVTPEMGEPKEYLIPKGKHISVHEGDHVRAGEALMDGS
SNPHDILRVLGQKELAKYLVDEVQEVYRLQGVKINDKHIETIVRQMLRRVRVKEVGDTNL
LIDDQIERWVFEEENEKAMDKGGRPATAESLLLGITKASLSTESFISAASFQETTKVLTQ
ASIEGKIDSLRGLKENVIMGRLIPAGTGLALYRNLRMVAEEPVIIPEPVEPEDEEVYEDE
V
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
ttggaagacattttcaattttttcgataagccgaaagatccgctccacttctcttcgatc
aagatctcgatctcctctccggacaagatccgcgagcgttccttcggggaagtgaagaag
ccggaaaccatcaactaccgtaccttcaaaccggagcgcgacggcctcttctgcgccaag
atcttcggtccgaccaaggactacgagtgcaactgcggcaagtacaagcgcatgaagcac
cgcggcatcgtctgcgagaagtgcggcgtcgaggtcatcccctccaaggtgcgccgcgag
cgcctgggtcacatcgacctggccactccggtggcccacatctggttcctgaagtccctg
ccgtcccgcatcggcaacctgatggacatcaccctgaaggacctggagaaggtcctctac
ttcgaggcctacgtggtcaccgacccgaaggagaccggcctgccgtttggcaccgtgtac
tccgaggaccagtaccagaaggctctcgaggaatataactacggcttcgaggccggcatg
ggcgctgcggccatccgcacctgcctgacctccatggacctggaccagctctccgagcag
ctccgcatcgagatgcaggaggctaccagcgaggccaagcgcaagaagaccgccaaacgt
ttgaaggtcatcgaggcgttcaagaactccggcaacaagccggagtggatgatcctcgag
tgcatcccggtcctgccgccggaactccgcccgctggtcccgctggacggcggccgcttc
gcgacttcggatctcaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcttgaag
cgcctgatggaactgcaggcccccgaggtcatcatcaggaacgagaagcgcatgctacag
gaggccgtcgacgcgctgttcgacaacggccgccgcggccgcgccatcgccggccccaac
aagcgtccgctgaagtcgctctccgacatgctgaaaggcaagtcgggccgcttccgtcag
aacctgctcggtaagcgcgtcgactactccggccgttccgtcatcgtcgtcggtccggaa
ctgaggctgcaccagtgcggtctgccgaagaagatggctctcgagctcttcaagccgttc
atctacaacaagctcgaggagcgtggtttcgtcaccaccatcaagagcgccaagaagatg
gtggagaaggagaagccggaggtctgggacgttctggaggaggtcatcaaggaacacccg
gtcatgctgaaccgcgccccgaccctgcaccgcctcggcatccaggccttcgagccggtg
ctcatcgaggggaaggcgatccagctccatccgctggtctgcaccgccttcaacgcggac
ttcgacggtgaccagatggcagtccacctcccgctctccgtggagagccaggtggagacc
cgcgtgctcatgatgtccaccaacaacatcctctccccggcgcacggcaagccgatcatc
gtgccgtcccaggacatggttctcggcatctactacatgacccgcgagaagcacttcgcc
cagggcgacggcaagatcttcgcctccccggaagaagtggccatcgcgtgggatgcgggt
gaaatccacctgcaggcccgcatcaaggtcaggatgaagaacctgcctgcggacgagaag
ccgaccctgatcgacaccaccaccggccgcgtgctgctgcgtgacgtccttccggacgcg
gtgccgtatgccacgatcaacaaggtcatgaccaagaaggagctctccaacctggtcgac
gtctgctaccgtctggccggcaacaaggagaccgtcatcctggccgacaagctgaagtcc
atcggcttccgctacgcagccaaggccggtatctccatctcgatcaacgacatggtcatc
ccggaagggaaaccggccatcatcaaccgcgccaccgaagaggtgcaggagatccagaac
cagtacaccgagggtctcatcaccgacggcgagcgttacaacaaggtcatcgacatctgg
gcgaaatcgaccgaggacatcgcgaaggagatgctggacaacctctcccgcgataccatc
agcgatccgcagggcaacgaggtgaaggttccctccttcaacgcgatccacatgatggcc
gactccggcgcaaggggttccgcccagcagatccgccagctggccgggatgaggggactc
atggccaagccgtccggcgagatcatcgagaccccgatcaccgcgaacttccgcgaaggc
ctcaccgtgctccagtacttcatctccacccacggtgcacgtaagggtctggccgatacc
gcgctcaagacggcaaactccggctacctcacccgccgtctggtcgacgtcgctcaggac
gccatcatcaccgaggtggattgcggcaccatcgacggcctgaccgtctcctccctcacc
gaggggggcgaggtcatcgagcacatcggggaccgtatccttggccgcgtggccctggac
gacatcctcgacccggtcaccggcgacgtgctggtggcggccaacatggagatcgacgag
accctggtcgccaggatcgaagcggcaggtctcgagaaggtcaagatccgctcggtgctc
acctgcgagagccgccgcggcatctgcgccaagtgctacggccgcgacctggcacgcggc
cacctggtgaaccgcggcgaggcggtcggcgtcatcgccgcccagtccatcggcgagccg
ggtacccagctgaccatgcgtaccttccacatcggtggtaccgcatcccgtcgcgcggag
cagacctcgctcgagacgaggaacgagggttatgccaagttcatcaacctgcactacgta
accaactcggaagggcaccacatcgtcatgaaccgcaacggcgaactggcgatcgtggac
gagaccgggcgcgagcgcgagaagtacggcgtcgtctacggtgccaagatcaaggtaagc
ccggagcagaaggtcacccaggggcagtccatcgccgagtgggacccgtacaccatgccg
atcctcaccgagatctccggccgggtcaagttcggcgacgtcgtcgagggtgtcaccatg
gaggagcaggtcgacgaagtcaccggtctctccaggaaggtcatcatcgagacccgcgac
tccgacaagcgtccgcgcatcaccatcaaggacgagtccggcaagaccgccaagatcggc
gagagcatggcgcgctactacctgccggtcggctccaacatcaacgcgatggaagacacc
atggtgaacgcaggtgacgtgatcgccaagatcccgcgtgaaaccaccaagaccaaggac
atcaccggtggtctgccgcgtgtcgccgagctcttcgaggcgagaaagccgaaagacttc
gcggtcatcaccgagatcgacggcgtggtcgccttcggcaaggacgccaagggcaaaagg
aaggtcatcgtcaccccggagatgggcgagccgaaggaatacctcatccccaaagggaag
cacatcagcgtccacgaaggggaccatgtccgcgccggcgaggcgctcatggacggttcc
tccaacccgcacgacatcctgcgcgtgctcggccagaaggaactggccaagtacctggtc
gacgaggtgcaggaggtctaccgtctccagggcgtcaagatcaacgacaagcacatcgag
accatcgtacgtcagatgctgcgccgcgtcagggtcaaggaagtcggcgacaccaacctc
ctgatcgacgatcagatcgagcgttgggtctttgaggaagagaacgagaaggcgatggat
aaaggcgggcgtcctgccacggcagagtccctgctccttggcattaccaaggcttcgctc
tcgaccgagtcatttatttctgctgcttccttccaggagacaacaaaagtattgacacag
gcatccatagaaggtaagattgacagtcttcgcggtctcaaagagaacgtgattatgggc
cgcttgatcccggcgggaacgggattggctctttaccgcaacctgcgcatggttgctgag
gagccagtaatcattccggagccagttgaaccggaagatgaagaagtctacgaagatgaa
gtctag
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integrated database retrieval system
