KEGG   Geobacter sp. M18: GM18_1085
Entry
GM18_1085         CDS       T01421                                 
Name
(GenBank) helicase, RecD/TraA family
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
geb  Geobacter sp. M18
Pathway
geb03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:geb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    GM18_1085
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:geb03400]
    GM18_1085
Enzymes [BR:geb01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     GM18_1085
DNA repair and recombination proteins [BR:geb03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     GM18_1085
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_RecD2 OB_YrrC SH3_13 UvrD_C_2 HHH_5 AAA_11 Viral_helicase1 PIF1 nSTAND3 Helicase_RecD AAA_22 RsgA_GTPase HHH NTPase_1 AAA_16 MeaB SLFN-g3_helicase AAA_28 TrwB_AAD_bind DEAD HHH_2 PhoH NACHT AAA_5 AAA_29 UvrD-helicase T2SSE cobW AAA ATP_bind_1 MobB ABC_tran TraI_hel_assoc_N AAA_14 NPHP3_N MMR_HSR1 CbiA AAA_24 ATPase_2 TsaE NB-ARC
Other DBs
NCBI-ProteinID: ADW12560
UniProt: E8WM46
LinkDB
Position
1314451..1316640
AA seq 729 aa
MIDRPTTGTAVERISGSLERVTFHSEETGFCVLRVKVPGHRELVTVTGSAASVTPGEFLE
CTGSWHNDRTHGMQFKAEHLKVVPPTTLEGIEKYLGSGMVHGIGHHFAKVLVQTFREEVF
DVIENSPERLLELPGIGRKRMESVAGAWVEQKAIREIMVFLQSNGLGTARAVRIYKSYGN
EAIFKVTENPYRLALDIHGIGFKTADALAANLGIARDSMIRAQAGVRHVLQELSGSGHCA
AGRKELAESAAALLQIPLPVIEAAIEAEIAEENLVADRIGGQPCVFLAPLYRAEVGVASS
LSRLCLGAPPWSGIVAEEAIPWVESHNGITLSASQRDAIRLALKNKVVVVTGGPGVGKTT
LVNSILAIIRSRQLRVTLCAPTGRAAKRLTESTGIEARTIHRLLEFDPQTFGFKRDRENP
LATDLLVMDEASMVDVVLMNKLLPAIPDHAGLIVVGDVDQLPSVGPGCVLSDIIESGAVA
TVRLTEIFRQAAGSRIIVNAHRINRGELPLKDEGKELADFYFIPAATAEDIRGKLLQVIT
ERIPKRFGFDPVRDIQVLTPMNRGGLGTGSLNAELQGVLNGKAEPRVTRFGTGFAPGDKV
IQTVNNYEKEVFNGDIGRIIEVRQEEGTLTVDFDDRAVEYQFGELDEVALAYATSIHKSQ
GSEYTAVVIPLAMQHYTMLERNLIYTAVTRGKKLVVVIGEAKALAMAVHNQKSQRRMTNL
AGRIGTAPP
NT seq 2190 nt   +upstreamnt  +downstreamnt
atgatagatagaccaaccacaggcacagcggtcgaaaggatttccggctccctggagagg
gtcaccttccatagcgaggagacggggttctgcgtgctgcgggtgaaggtcccggggcac
cgggagctggtgacggtgacagggagcgcggcatcggtcactccgggggagttcctggag
tgcaccggttcctggcacaacgaccgcacccacgggatgcagttcaaggccgagcacctg
aaggtggtcccgccgaccacgctggaggggatcgagaagtacctgggttccggcatggtg
cacggcatcgggcaccacttcgcgaaggtgctggtgcagaccttccgcgaggaggtcttc
gacgtcatcgagaacagccccgagcggctcctggaactgccggggattggccgcaagcgc
atggaaagcgtggcaggcgcctgggtggagcagaaggcgatccgggagatcatggttttc
ctgcagtcgaacgggctggggaccgcccgcgccgtgcggatttacaagagctacggcaac
gaggccatcttcaaggtgaccgagaacccgtaccggctggccctcgacatccacggcatc
ggcttcaagaccgccgacgccctcgccgcgaacctcggcatcgcgcgcgattccatgatc
cgggcgcaggcgggcgtcagacacgtgctgcaggagctttccggcagcggccactgtgcg
gcagggagaaaggaactggcggagagcgccgcagccctgcttcagatcccgctaccggtc
atcgaagcggccatcgaggcggaaatcgcggaggaaaacctggttgccgaccggatcggg
gggcaaccctgcgtattcctggcgccgctctaccgcgccgaggtgggcgtcgcctccagc
ctctcgcgcctttgcctgggggctcccccctggagcggcatcgtcgccgaagaggccatc
ccctgggtggagagccacaacggcatcaccctctccgcttcgcagcgcgacgccatccgg
ctcgccctgaagaacaaggtggtcgtggtgaccggcggccccggggtcggcaagaccacg
ctggtgaacagcatcctggccatcatccgctccaggcagttgagggtgaccctgtgcgcc
ccgaccggacgcgcggccaagcggctcaccgaatcgaccggcatcgaggccaggaccatc
catcgcctgctggagttcgatccgcagactttcggcttcaagcgcgaccgcgagaacccg
ctcgcgaccgacctcctggtcatggacgaggcctccatggtcgacgtggtgctgatgaac
aagctcctgccggccatcccggaccacgcggggctgatcgtcgtgggggacgtggatcag
ctcccctccgtcggccccggctgcgtcctttccgacatcatcgagtcgggcgccgtcgct
accgtgcgcctcaccgagatcttccggcaggcggcgggctcgaggatcatagtcaacgcc
caccgcatcaaccgcggcgagctccctctgaaagacgagggaaaggagctcgccgacttc
tacttcatcccagcagcgacagccgaggacatccgcggcaagctgctccaggtgatcacc
gagcgcatccccaagcgtttcggcttcgacccggtgcgcgacatccaggtgctgaccccc
atgaaccgcggcggactgggaaccggatcgctgaacgccgagctgcagggggtgctgaac
ggcaaggccgagccgagggtgacccgcttcgggaccggcttcgcgcccggcgacaaggtg
atccagacggtgaacaactacgagaaggaagtcttcaacggtgacatcggcaggatcatc
gaggtgcggcaggaagaggggaccctgacggttgatttcgacgacagggcggtagaatac
cagttcggcgagttggacgaggtggcgctcgcctacgccaccagcatccacaagagccag
gggtcggaatacacggcggtggtcatcccgctggccatgcagcactacaccatgctggag
cgcaacctgatttacaccgcggtgacccgcggcaagaagctcgtggtcgtgatcggcgag
gccaaggcccttgccatggcggtgcacaaccagaagtcccagcgcaggatgaccaacctg
gctggcaggatcggcaccgcgcccccctga

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