Geobacter sp. M18: GM18_1168
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Entry
GM18_1168 CDS
T01421
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
geb
Geobacter sp. M18
Pathway
geb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
geb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GM18_1168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
geb03019
]
GM18_1168
03016 Transfer RNA biogenesis [BR:
geb03016
]
GM18_1168
Enzymes [BR:
geb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
GM18_1168
Messenger RNA biogenesis [BR:
geb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GM18_1168
Transfer RNA biogenesis [BR:
geb03016
]
Prokaryotic type
tRNA degradation factors
GM18_1168
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH_NusA_2nd
KH-I_KHDC4-BBP
KH_2
DUF5403
DUF8529
OB_PDCD11
Motif
Other DBs
NCBI-ProteinID:
ADW12642
LinkDB
All DBs
Position
1418312..1420402
Genome browser
AA seq
696 aa
AA seq
DB search
MVHTVQTECCGKTITIETGKIAKQASGAVMIKSGDTMVLVTAVAMKSAKEGQGFFPLTVN
YQEKAYAGGRIPGSFFKREGRPSDNETLTCRLIDRPIRPLFPEGFLNDTQVMATVVSADK
DHDPGILAMIGASAALMVSDVPFAGPIAGVKVGRVDGVFIANPSAEQEEQSDMEIVIAAS
KDAILMVEGSASEVSENDLLEAIFFGKQAVQGILAAQEELVAKVAPVKRNIPAPVVNTDL
KARVDALAKEEMRGAVRIKTKVERHDAIDAITVKTVAALAEEFEGSEKDVKAFIEELEYD
LVREHIIKDGERIDGRDTKTIRNIATEVGLLPRAHGSALFTRGETQSIVAATLGTSVDEQ
RIDSLYGDSRKKFLLHYNFPPYSVGETSFRLAPGRREIGHGMLAERALQQVLPKHDDFPY
TIRIVSDITESNGSSSMATVCGGSLSMMDAGIPIKAPVAGIAMGLIKEGDDFAILSDILG
DEDHLGDMDFKVAGTAEGVTALQMDIKIGGVTREIMSAALAQAKAGRVHILGEMAKTIAT
SRGDLSAFAPRITTIWVKVDKIRDVIGSGGKNIRSVTEATGVAIDIDDTGKINIASTNKE
ACDLAIKMIRNLTAEAEEGKLYMGTVKKIMEFGAFVEIFPGTDGLVHVSELDTERVKNVS
DILKEGDKVLVKCIGIDKQGKIKLSRKEALGQTFTE
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggtacacaccgtacaaaccgagtgctgtggcaagacgattacaatcgaaacaggaaag
atagcgaagcaggcaagcggcgccgtcatgatcaaaagcggcgacaccatggtgctggtc
accgccgtcgccatgaaatcggccaaggaagggcagggcttcttcccgcttaccgtcaac
taccaggaaaaggcatacgcaggcggccggattcccggctccttcttcaagcgcgagggg
cgtccctccgacaacgaaaccctcacctgccgtctcatcgaccgcccgatccgtccgctg
ttcccggaagggttcctgaacgatacccaggtgatggccaccgtggtctccgctgacaag
gaccacgatccgggcatcctcgccatgatcggcgcttccgccgccctcatggtctccgac
gttcccttcgccggcccgatcgccggcgtgaaggttgggcgcgtggacggcgtgttcatc
gccaacccgagtgccgagcaggaagagcagagcgacatggagatcgtcatcgcggcctcc
aaggacgccatcctgatggtcgaaggctccgcttccgaggtctccgagaacgacctcctc
gaagcgatcttcttcggcaagcaagccgttcagggcatcctcgccgctcaggaagagctg
gttgccaaggtcgcgcctgtcaaacgcaacatcccggcgccggtcgtcaacaccgatctc
aaggcccgcgtggatgcccttgccaaggaagagatgaggggtgcggtccgcatcaagacc
aaggtggagcgtcacgatgcgatcgacgccatcaccgtgaagaccgtggcggccctcgcc
gaggagttcgaaggttccgagaaggacgtgaaagcgtttatcgaggagctcgagtacgac
ctggtgcgcgagcacatcatcaaggacggcgagcgcatcgacggccgcgacaccaagacc
atccgtaacatcgcgaccgaagtaggcttgctgccgcgcgcccacggttccgccctgttc
acccgcggcgagacccagtccatcgtggccgccaccctgggcacctcggtcgacgagcag
cgcatcgactcgctctacggcgattcccgcaagaagttcctgctgcactacaacttcccg
ccgtactccgtcggcgagaccagcttccgcctcgccccggggcgccgcgaaatcggccac
ggcatgctcgcagagcgcgccctgcagcaggtgctcccgaagcacgacgacttcccctac
accatcaggatcgtctccgacatcaccgagagtaacggctcctcctcgatggccaccgtc
tgcggcggctccctctccatgatggacgccggcatcccgatcaaggcaccggtcgccggt
atcgccatgggcctcatcaaggaaggtgacgacttcgccatcctttccgatatcctgggc
gacgaagaccacctgggcgacatggacttcaaggtggccggtaccgccgaaggggtcacc
gcgctgcagatggacatcaagatcggcggcgtgacccgcgagatcatgagcgccgccctg
gcacaggccaaggcaggcagggtccacattctgggcgagatggcgaaaaccattgccacc
tcgcgcggcgacctctccgccttcgccccgcgcatcaccaccatctgggtcaaggtcgac
aagatccgcgacgtcatcggctccggcggcaagaacatcaggagcgtcaccgaggcgacc
ggcgttgccatcgacatcgatgacaccggcaagatcaacatcgcctccaccaacaaggaa
gcctgcgacctcgccatcaagatgatccgcaacctcaccgcagaggctgaggaagggaag
ctctacatgggcaccgtcaagaagatcatggagttcggcgcgttcgtcgagatcttcccg
ggaaccgacggcctggtccacgtctccgagctcgacaccgagcgcgtcaagaacgtgagc
gacatcctcaaggaaggggacaaggtgctggtgaagtgcatcggcatcgacaagcagggc
aagatcaagctctcccgcaaagaggccctgggccagactttcaccgaataa
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