Geobacter sp. M18: GM18_1842
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Entry
GM18_1842 CDS
T01421
Name
(GenBank) GAF modulated sigma54 specific transcriptional regulator, Fis family
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
geb
Geobacter sp. M18
Brite
KEGG Orthology (KO) [BR:
geb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
geb03000
]
GM18_1842
Transcription factors [BR:
geb03000
]
Prokaryotic type
Helix-turn-helix
Other families
GM18_1842
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
Sigma54_activ_2
HTH_8
GAF
PAS_4
PAS
AAA_5
MCM
AAA
AAA_2
PAS_9
Mg_chelatase
HTH_50
HTH_30
AAA_30
sCache_3_3
PAS_8
AAA_16
DHR-2_Lobe_C
nSTAND6
AAA_7
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
ADW13305
LinkDB
All DBs
Position
complement(2220838..2222811)
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AA seq
657 aa
AA seq
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MSTHALEPTQKAWRLYVEEDILDLQQLRPEVADSWQRCRNLKIDPSKARECVVNLPELRE
RLYRKQQMVKVARPFMDNLYNFVKGSGFQVVLTDEHGYLLEVLGDNEIVSRTKQVLLCPG
GIWSEAAQGTNAIGTALVERRPAQVYAWEHYCKQHHFLTCSAAPIFDPDGELIGVLDISG
DYHVANAHTLGMVVAAVNAVENQLRLMRATEKLYVAYRYSNALLDNISDGLISINNNGII
TEINTKGAEIFAINPVRAKGRHIEQICGPHSPMLKVLSDGNEYVDREIIIEKVGQKVYSS
ASLIRDDAGGVIGVVAVFRKNDNRPPQKRPTVLYSHCYTLDDIIGESPAILSAKEWAALA
AESSSTVLINGESGTGKELFAQAIHNASPRQGRQFIALNCAALQESLVESELFGYEEGSF
TGAKRGGQAGKFEIADGGTVFLDEIGDMSLSAQAKLLRVLQEKKVSRIGSISEKSVDIRI
IAATNKDLQSEVQAGNFREDLYYRLNVLGMRIPALRERSEDLDLLTRHLVQKLAAKLSKG
PVRIKEGFLEKIRSHNWPGNIRELENALERALIRSGAHGVLSSDLLDFNLAPQTASIEPK
PSEITSLRDAEKRLICEAVDFYDGNIRKASAKLGIGRNTLYRKLEEYNICCGRELRR
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacacacgctcttgaaccaacgcagaaggcctggcgcctctatgtcgaggaggat
atcctcgatctgcagcaactgcggcccgaggtggcggattcctggcagcgttgccgcaac
ctgaagatcgacccctcgaaggcgagggagtgtgtcgtcaacctaccggagctgcgggag
cggctttacaggaaacagcagatggtgaaggtggcgcgtccctttatggacaacctgtac
aacttcgtcaaggggtccggtttccaggtggtactgaccgacgagcacggctatctgctg
gaggtgcttggcgataacgagatcgtatcccgaaccaagcaggtgctgctttgcccgggc
ggcatctggagcgaggcggcccaggggaccaacgcgatcgggacggcgctggtcgagaga
cggccggcgcaggtctatgcctgggaacactactgcaagcagcaccacttcctgacctgc
tccgccgcgcccatcttcgacccggacggggagctgatcggcgtcctcgacataagcggc
gactaccacgtcgccaacgcccacacgctggggatggtagtggccgcggtcaacgcggtg
gaaaaccagctacggctcatgcgcgccaccgagaaactctacgtggcataccgttactcc
aacgccctgcttgacaacatctccgacggcctgatttccatcaacaacaacggcatcatc
accgagatcaacacgaagggggctgagatcttcgcgatcaacccggtccgcgccaagggg
cgccatatcgagcagatctgcggcccgcactccccgatgctgaaggtgctctccgatggc
aacgaatacgtggatcgcgagatcatcatcgagaaggtgggacaaaaggtctacagttcc
gcctcgcttatccgagacgatgccggcggggtgatcggcgtggtcgcagtattccggaaa
aacgacaaccgccccccccaaaagcgccccaccgtcctatactcgcactgttacaccctg
gacgacatcataggggagagcccggccatactctcggcaaaggagtgggcggctctggcg
gcggaaagttcatccaccgtgctgatcaacggagaaagcgggacgggaaaggagctcttt
gcccaggcgatccacaacgcgagcccgcgccagggaaggcagttcatcgccctcaactgc
gcggcgctgcaggaaagcctggtcgagagcgagctgttcggctacgaggaggggagcttc
acgggtgccaagcggggcgggcaggcggggaaattcgaaattgccgatggcggcaccgtt
ttcctggacgagattggagatatgtccttgagcgcgcaggcgaagctgttgcgggtgctc
caggagaagaaggtgtcccgcatcggctcgatcagcgagaagtcggtagacatccggatc
atcgccgccacgaacaaggacctgcagagcgaggtgcaagcggggaacttcagggaggat
ctctattaccggctgaacgtgctcggcatgcggatcccggctctcagggagaggagtgag
gacttggacctgcttacccggcacctcgtgcaaaaactcgcggccaagctttccaaaggt
ccggtccgaatcaaggagggcttcctggagaagatcaggtcccataactggccggggaac
atcagggaactggagaatgccctggagagggcgctgatccgctcaggagcgcacggggtg
ctgagttccgacctgctcgatttcaacctggccccgcagacggcgtcgatcgagccgaag
ccgtcggagataacctcgctgcgggatgccgagaaacgactcatctgtgaggcggtcgac
ttttacgacgggaacatccggaaggcatccgctaagttgggcatcgggcgcaacacgttg
tatcgcaagctggaagagtacaacatctgttgcggcagggagttgcgacggtaa
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