Geobacter sp. M18: GM18_3651
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Entry
GM18_3651 CDS
T01421
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
geb
Geobacter sp. M18
Pathway
geb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
geb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GM18_3651
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
geb03019
]
GM18_3651
03009 Ribosome biogenesis [BR:
geb03009
]
GM18_3651
Enzymes [BR:
geb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GM18_3651
Messenger RNA biogenesis [BR:
geb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GM18_3651
Ribosome biogenesis [BR:
geb03009
]
Prokaryotic type
rRNA processing factors
GM18_3651
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ADW15079
UniProt:
E8WP96
LinkDB
All DBs
Position
complement(4273670..4276483)
Genome browser
AA seq
937 aa
AA seq
DB search
MSKKMLINALHAEEARVAIVEDGRLVDLDVEIAGNEQTRGNIYKGVVVRVEQGLQAAFVD
IGLKKLGFLQMGELHPENWKWRDDIPEDQRHRRPRIQEVLRRGQELIVQVEKGERDNKGS
ALTTYASLPGRYMVLMPGSDSAGISRKVESEGERKKLKEIIAEMTIPEGYGYIIRTEAMG
RTRDELQKDLDNLIALYEGIREKGLAMKGAGMIYQESALIIRTIRDYFSADIDEVLVDSK
DVFKDVRDALKEIDPAFEKLVKMHQEKRPIFSRYQLEEQIDLIYEKKVPLKSGGSIFIEP
TEALVSIDVNSGKSTGEKGVEDTAFKTNLEAAEEAARQLRLRDLGGLIVIDFIDMRDRKH
NSEVEKTLKSALKADKARVNVSRISEFGLLEMSRQRIRQTLNQASTLECPHCDGRGKVKS
VEAMALSFLRKVHAAAAKGTIGEVVGSLPLEVAYYLLNRKRHELSQIENDYDIEVTVKGK
PSYLLNQMELELIKREKLPQEELPQEKAQHGRPAKEEAAVAEPAAAEGRKKKKKGKKAQE
PEAAPHAAPHAEAAHAEAVPVALVEEPTGAEYVVTLESETEEHKKKRRRKRKRGKGGAAE
AAAEQAAAPAEAMVELPGGAPAELPEPGFVVEQPAAQGAEHGAHEPGEEGKKKRRRKRRR
GKGGHDGHPAHELKPGEAAQLESAVPVAAVPVEAVPVGEAAAANEAGAEKKPAKKRRSRG
KGAAAETAPEAVAASVAASAVPAEPPTAAMHRSPATESVAAEAAKPAKKARPARKPKAAA
AVESAAPATPAAAPVAEPTAPVEKAAKPKRGKSAKAEAPGVAVAVPAEAAVAEKPAEKPK
TAKAPKAVKEPKELKQPKEPKEPKEAKVKEPKPAKPAKEPKAPKTAGAAEAGPAEAAAGK
AKEPAKRAKKVAEPGAAAEEKPKKPRAPRKKKEETAA
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagaagatgctgattaatgcgctccacgcagaagaggcgcgagtggcgatcgtc
gaggacggacgcctggtagacctggatgtcgagatcgccggcaacgagcagacgcgcggc
aacatttacaagggggtagtggtccgcgtggagcaggggctgcaggccgccttcgtggac
atcggcctgaagaagctgggcttcctgcagatgggggagctgcacccggagaactggaaa
tggcgtgacgacatcccggaggaccagcgccaccgccgtccccgcatccaggaggtgctg
agaagggggcaggaactgatcgtccaggtggagaagggggagcgcgacaacaagggatcc
gccctcaccacctacgcttcactgccggggcgctacatggtgctgatgccgggcagcgac
tccgccggcatctcccgcaaggtggagagcgagggcgagcgcaagaagctcaaggaaatc
atcgccgagatgaccatccccgaggggtacggctacatcatccgcaccgaggcgatgggg
cgcacccgcgatgagctgcagaaggacctggacaacctgatcgccctgtacgaggggatc
cgggagaaggggctggccatgaagggggccggcatgatctaccaggagtctgcgctcatc
atcaggaccatccgcgattacttctccgccgacatcgacgaggtgctggtcgacagcaag
gatgtcttcaaggacgtgcgcgacgccctgaaggagatcgatcccgccttcgagaaactg
gtcaagatgcaccaggagaagcgtcccatcttttcccgctaccagctcgaggagcagatc
gacctcatctacgagaagaaggtgccgctcaagtccggcgggtccatcttcatcgagccc
accgaggcgctggtttccatcgacgtcaactccggcaagtccaccggcgagaaaggggtc
gaggacaccgctttcaagaccaacctggaggctgccgaggaggcggcgcgccagctcagg
ctgcgcgacctgggcggcctcatcgtcatcgacttcatcgacatgcgcgacagaaagcac
aactccgaggtggagaagaccctgaagtcggctctcaaggcggacaaggcgcgtgtgaac
gtatcgcgcatctccgagttcgggctcttggagatgtcccggcagcgcatccgccagacc
ctgaaccaggcgagcaccctggagtgcccgcactgcgacggcagggggaaggtgaaatcg
gtcgaggcgatggctctttccttcctgaggaaggtccacgcggccgccgccaaggggacc
atcggcgaggtggtgggaagcctgccgctcgaggtggcttactaccttttgaaccgcaag
cgtcacgagctctcccagatcgagaacgactacgacatcgaggtcacggtgaagggtaag
ccttcctacctcttgaatcagatggagctcgaactgatcaagcgcgagaaactcccgcag
gaggaactgccccaagagaaggcgcagcatgggcgtccggcgaaggaagaggctgccgtc
gccgagcccgctgccgccgaagggcgcaagaaaaagaagaaagggaagaaggcccaggag
ccggaggccgcgccccatgccgcgccccatgccgaggccgcgcatgccgaggcggtgcct
gtcgccctggtcgaggaaccgaccggcgcagagtacgtggtgacgctggagtcggagacg
gaagagcacaagaagaagcgtcggcgcaagcgcaagcgcggcaagggtggcgccgctgag
gcggctgccgagcaggccgccgcacctgcagaggcgatggtcgagctccctggcggagcc
ccggccgagcttcccgagccgggcttcgtggtggagcagccggcggcgcagggcgcagag
cacggagcccacgagccgggtgaagaggggaaaaagaaacgccgccgcaagagacggcgc
ggcaagggggggcacgacgggcatccggcacacgagctgaagccgggcgaggccgcccag
cttgaatcagctgtaccggttgctgccgtacctgtcgaggctgtaccggtaggtgaggcc
gcggctgcaaacgaagccggcgccgagaagaagcccgccaagaagagaaggagccgcggc
aagggagccgctgcggaaactgctcctgaagcggtcgcagcgagcgttgcagcttcggca
gttccggcggagccgccgacagccgccatgcatcggtcacccgcaaccgagtccgtagcc
gccgaggctgccaagccggccaagaaggcacgccccgctcgcaaaccgaaggccgccgct
gccgtcgagtctgccgcaccggcaactcccgctgccgcgccggtcgccgagccgactgcg
cctgttgagaaagccgccaagcccaaaaggggcaagagcgccaaggctgaggcacccggg
gtagcggtagctgtccccgccgaggccgcagttgccgaaaaaccggccgagaagcctaag
accgccaaggcgcccaaagccgtcaaggaacccaaggaactcaaacagcccaaggaaccc
aaagagcccaaggaagccaaagtcaaggagcccaaacccgccaaaccggcgaaggagccc
aaggcccccaaaacggccggcgcagctgaagccggtccggctgaagccgctgcgggcaag
gcgaaagagccggccaagcgggccaagaaggtggcagagcctggcgccgctgccgaggag
aagcccaagaagccgcgggcaccgcgtaagaaaaaagaagagacagctgcctga
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