Geobacter sp. M18: GM18_4438
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Entry
GM18_4438 CDS
T01421
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
geb
Geobacter sp. M18
Pathway
geb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
geb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GM18_4438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
geb03019
]
GM18_4438
Messenger RNA biogenesis [BR:
geb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GM18_4438
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
ADW15843
LinkDB
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Position
complement(5189484..5191160)
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AA seq
558 aa
AA seq
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MEASSIENTGLKFVALGGLGEIGLNMAAFEYGEDIVIVDCGLMFPEPYMLGIDVVIPDIG
YLLERADRIRAILLTHGHEDHIGALPYVLRDINPPIYGTALTLGFVKEKLKEFELDQKAD
LRVVKPRDLVELGDFIVEFIRVAHSTVDGCALAITSPEGVVIHTGDFKLDQTPVDGELTD
LPTFARYGQAGVLALFADSTNIEREGYTLSERVVGEAFDEIFPSCAGRVIVAAFSSNIHR
VQQVVHAAEKNGRKVLLNGRSMIANVQIARELGYLKIPDGLLMDLKELPRLPKEQVCMIT
TGSQGEPRSSLIRIAMDDHKQIKLERGDTVILSSRFIPGNEKTISDLMNHLYRRGAEVIH
EKVSEVHVSGHASQEELKLLHNLVKPRFFVPVHGEYRHLVKHAQLAQKVGTSEERCILAV
NGDVVLFSGGEACIVEQVNTGRVFVDGKGVGDVGNVVLKDRKHLSEDGMVVVLIGINQVS
GEIIYGPDIVSRGFVFEDESQQYLDEAKKVVLDTLALVSAEALTDWNEVKLEVRRVLRRF
FNKTIERRPVILPLVLEM
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
ttggaagctagcagcattgaaaataccggcctgaagttcgtggcactgggagggctcggc
gagatcggcctgaacatggccgccttcgagtacggcgaggatatcgtcatcgtcgactgc
gggctcatgttcccggagccgtacatgctgggcatcgacgtggtcatcccggatatcggc
tacctcctggagcgggcggaccggatccgcgccatcctgctcacgcacggccacgaggac
cacatcggcgcgctcccttatgtgctgcgggacatcaatccccccatctacggcaccgcc
ctcaccctgggcttcgtcaaggagaagctgaaggagttcgagctcgaccagaaggccgac
ctgcgcgtggtgaagccccgggacctggtcgagctgggtgacttcatcgtcgagttcatc
cgcgtggcccactccaccgtggacggctgcgccctggccatcacctccccggagggggtg
gtgatccacaccggcgacttcaagctggaccagaccccggtggacggcgagctgaccgac
ctgcccaccttcgcccgctacgggcaggcaggggtcctggcgctcttcgccgactccacc
aacatcgagcgggaggggtacaccctttccgagcgggtggtgggggaggccttcgacgag
atcttcccgagctgtgccggccgcgtgatcgtcgccgccttctccagcaacatccaccgg
gtacagcaggtggtgcacgcggcggagaaaaacggcaggaaggtcctcttgaacggccgc
tccatgatcgccaacgtgcagatcgcccgggagctcggctacctgaagataccggacggc
ctcctgatggacctcaaagagctccccaggctccccaaggagcaggtctgcatgatcacc
accgggagccagggggaaccgagaagctcgctgatccgcatcgccatggacgaccacaag
cagatcaagctggagcgcggcgataccgtcatcctctcctcgcgcttcatccccgggaac
gagaagaccatctccgacctgatgaaccacctgtaccggcgcggcgccgaggtgatccac
gagaaggtctcggaggtgcacgtctccggacacgccagccaggaggagctgaagcttctg
cacaacctggtgaagccacgcttcttcgtcccggtgcacggcgagtaccggcacctggtg
aagcatgcgcaactggcccagaaggtcggcacctccgaggagcgctgcatcctcgccgtg
aacggcgacgtggttctcttctcggggggcgaggcgtgcatcgtggagcaggtgaacacc
ggacgggtcttcgtggacggcaagggggtcggcgacgtcggcaacgtggtgttgaaggac
agaaagcacctctccgaggacggcatggtcgtggtgctgatcggcatcaaccaggtgagc
ggcgagataatctacggcccggacatcgtgtcacgcggcttcgtcttcgaggacgagagc
cagcagtacctggacgaggcgaagaaggtggtgctggacaccctggcgctggtgagcgcc
gaggcgctgaccgactggaacgaggtgaagctggaagtgcgccgtgtgctgcgccgcttc
ttcaacaagacgatcgagaggcggccggtgatcctgccgctggtattggagatgtaa
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