Geobacter sp. 60473: GEO60473_08200
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Entry
GEO60473_08200 CDS
T10337
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
gec Geobacter sp. 60473
Pathway
gec03030
DNA replication
gec03430
Mismatch repair
gec03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GEO60473_08200 (dnaE)
03430 Mismatch repair
GEO60473_08200 (dnaE)
03440 Homologous recombination
GEO60473_08200 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gec03032
]
GEO60473_08200 (dnaE)
03400 DNA repair and recombination proteins [BR:
gec03400
]
GEO60473_08200 (dnaE)
Enzymes [BR:
gec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GEO60473_08200 (dnaE)
DNA replication proteins [BR:
gec03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GEO60473_08200 (dnaE)
DNA repair and recombination proteins [BR:
gec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GEO60473_08200 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
SidD_cat
HROB
Motif
Other DBs
NCBI-ProteinID:
BET57780
UniProt:
A0AA86J2A4
LinkDB
All DBs
Position
928964..932431
Genome browser
AA seq
1155 aa
AA seq
DB search
MSFVHLHLHTQYSLLDGAIRLGDLVKKVKSHDMPAVAITDHGAMFGAMEFYLKCKDKDVK
PVIGAEVYIAPGSRFVKEARGGEAGAGYHLLLLCENMTGYRNLSKLVSIGFKEGFYYKPR
IDKEVLAENAEGLICLSACLKGEVAYLCERDRVAEAVDVARWYADLFPDRYYIELQENGL
VEQDKANRGLLEVAREVGLPLVATNDCHYLNREDARAHEVLLCIQTGKTMNDPSRMRFSV
DEFYVKTPEEMAAAFHYAPEAISNTVKIAERCDLSFDFKTYHFPRFEPPVGLSLDQMLEE
AARTGLESRLTAIRAKHSSMTAEQEQAYWDRLAIELACIKQMGFPGYFLIVADFINWAKD
HGIPVGPGRGSAAGSLVAYAIRITDLDPIPYNLLFERFLNPERISMPDIDVDFCQDRREE
VIQYVTEKYGRDKVCQIITFGTMSARAVIRDVGRALDMTYGEVDRIAKLVPEVLGITLEK
AIAQEPKLNEAAEADPRVKELLEVALRLEGLARHASTHAAGVVVAPDVLEQFCPVYKDQK
SGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIFNAVRHIRADKKPDFDIAVLRDDDEESY
KLLQAGNTTGVFQLESSGMRELLRKLKPSCFEDIIAVCALYRPGPLGSGMVDDFIDRKHG
RKKVVYDLPQLEPILKDTYGVIVYQEQVMQIARTLAGYSLGGADLLRRAMGKKDPAEMAK
QRDIFLEGAKNNGIDLQKAGAIFDLMAKFAEYGFNKSHSAAYALVAYQTAYLKAHYPVEF
MAALLTEDMANTDKVVKNIADCREMGIEVLPPDINASDLSFRVLGNSIRFGLGAVKNVGE
SAIEAIIEARGDGPFKDIFEFCERVDLRKVNKRVVESLIKCGAFDSTGGRRSQLTAALED
AMSLGQKIQQEKESAQVSLFGAEEIVRTNGNGKGKVQLPDLPEWDDKFLLAQEKEALGFF
ITGHPLGRHEKDIRRFTTADTATLEERADKSEVKICGIVATMKELMTKKGDRMAFATLED
LVGSVEVVVFPEVFAKASEYLKSDDPLLVTGTIDKGEKSAKIMASDVVPLREVTARQTSR
VIFALQGDGLDRYRLEELKAIMLRHPGTCKATLTIDIPDQCRATIALPDSCMVAPSDELT
VEVKNLFGYHAVAFE
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgagctttgtccatctccatctccatacccagtactcccttctcgacggcgccatccgc
ctgggcgacctggtgaaaaaggttaagtcccacgacatgcccgccgtggccatcaccgac
cacggcgccatgttcggggccatggaattctaccttaaatgcaaggacaaggacgtgaag
ccggtcatcggcgcggaggtctatatcgcgccgggctcccgtttcgtcaaggaggccagg
gggggggaggccggcgccggctaccacctgctgctcctgtgcgagaacatgaccggctac
cggaacctgtccaaactggtctccatcggcttcaaggaagggttctactacaagccgcgc
atcgacaaggaggtcctggccgagaacgccgaggggctcatctgcctttccgcctgcctc
aagggggaggttgcctatctgtgcgaacgcgaccgggtcgccgaggcggtggacgtggcc
cgctggtatgccgatctcttcccggaccgctactacatcgagcttcaggaaaacggcctc
gttgaacaggacaaggccaaccgggggctgctggaggtggcgcgggaagtgggtctgccg
ctggtggccaccaacgactgccactatctcaaccgggaggatgcccgggcccacgaggtg
ctcctctgcatccagaccggcaagaccatgaacgatccgtcgcggatgcgcttctccgtt
gacgagttttacgtgaagacccccgaggagatggccgccgcattccactatgcgcccgag
gcgatctccaacaccgtgaagatcgccgagcggtgcgatctttcctttgacttcaagacc
tatcatttcccccgcttcgagccccccgtcggcctgagccttgatcagatgctggaggag
gctgcccgcacgggactggagtcgcgcctgaccgctatccgggccaagcactcgtccatg
accgccgagcaggagcaggcctactgggaccgcctcgccatcgagctcgcctgcatcaag
cagatggggttcccgggctacttcctgatcgtggccgatttcatcaactgggccaaggac
cacggcattcccgtgggcccgggccggggctcggcggccggctcgctggtggcctacgcc
atccggatcaccgacctggacccgatcccctacaacctcctcttcgagcgcttccttaac
ccggagcggatatccatgcccgatatcgacgtggacttctgccaggaccggcgcgaggag
gtgatccagtacgtcaccgagaagtacggccgcgacaaggtctgccagatcatcaccttc
gggacaatgtccgcccgggccgtcatccgcgatgtggggcgcgccctggacatgacctac
ggcgaggtggaccggatcgccaagctggtgccggaagtcctgggcattacgctggaaaag
gccattgcgcaggagcccaagctcaacgaggcggccgaggccgatccgcgggtgaaggag
ctgctggaggtggccctgcgcctggaggggcttgcccgccatgcctccacccacgcggcc
ggcgtggtggtggcccccgatgtgctggagcagttctgcccggtctacaaggaccagaag
agcggctcgctcaccacccagtactccatgaagtacgtggagaagatcgggctggtcaag
ttcgacttcctggggctcaagaacctgacggtcatattcaacgcggtccggcacatccgg
gccgataaaaagccggacttcgacatcgccgtcctgcgggatgacgacgaggagagctac
aagctgctccaggccggcaacaccaccggggtgttccagcttgaatcctcggggatgcgg
gaactgctccgcaagctcaagccctcctgcttcgaggacatcatcgccgtctgcgccctc
taccgtcccggccccctcggctcgggcatggtggacgacttcatcgaccgcaagcacggc
cgcaagaaggtggtctacgacctgccgcaactggagccgatcctcaaggatacctacggg
gtcatcgtttaccaggagcaggtcatgcagatcgcccggaccctggccggctactccttg
ggcggcgccgacctgctgcgccgggccatgggcaagaaggacccggccgagatggccaag
cagcgggacatcttcctggagggtgccaagaacaacggcatcgatctccagaaggccggg
gccatcttcgacctgatggccaagttcgccgagtacgggttcaacaagtcccactcggcc
gcctatgccctggtggcctaccagaccgcctacctcaaggcccactatccggttgagttc
atggccgcgctcctgaccgaggacatggccaacaccgacaaggtggtcaagaacatcgcc
gactgccgcgagatggggatcgaggtgttgcccccggacatcaatgcctcggatctgtcg
ttccgggtcctgggcaactccatccgcttcggtctcggcgcggtcaagaacgtgggcgag
tcggccatcgaggccatcatcgaggcccggggcgacggcccgttcaaggatattttcgag
ttctgcgagcgggtcgacctgcgcaaggtcaacaagcgggtggtggaatccctgatcaag
tgcggcgccttcgactcgactggcgggcggcgttcccagctcacggcagctcttgaagat
gccatgtccctgggccagaagatccagcaggagaaggaaagcgcccaggtgtcgctcttc
ggtgccgaggagatcgtccggaccaacggcaacggcaagggaaaggtgcagctccccgat
ctgcccgaatgggacgacaagttcctgctggcccaggaaaaggaggccctcggcttcttc
atcaccggccatcccctgggccgccacgagaaggacatccggcgcttcaccaccgccgac
accgccaccctggaggagcgggccgacaagagcgaggtcaaaatctgcggaatcgtggcc
accatgaaggagctcatgaccaagaagggggaccggatggcctttgccaccctggaggac
ctggtgggctccgtggaggtggtggtcttccccgaggtctttgccaaggcgtcggaatac
ctcaagtcggacgatccgctgctggtcaccggcaccatcgacaagggggagaagagcgcc
aagatcatggccagcgacgtggttcccctccgggaggtgaccgcgcggcagacctcacgg
gtgatcttcgccctgcagggggacggcctcgaccgctatcgcctggaggagctcaaggcg
atcatgctccgccatcccggtacctgcaaggccactctcaccatcgacatcccggaccag
tgccgcgccactattgccctgcccgattcctgcatggttgcgccctccgacgaattgacg
gtggaggtaaagaatctcttcggctatcatgccgttgcgtttgaatag
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