Geobacter sp. 60473: GEO60473_08670
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Entry
GEO60473_08670 CDS
T10337
Symbol
rlmD_1
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
gec Geobacter sp. 60473
Brite
KEGG Orthology (KO) [BR:
gec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gec03009
]
GEO60473_08670 (rlmD_1)
Enzymes [BR:
gec01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
GEO60473_08670 (rlmD_1)
Ribosome biogenesis [BR:
gec03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
GEO60473_08670 (rlmD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Methyltransf_25
Methyltransf_15
Cons_hypoth95
PrmA
TRM5-TYW2_MTfase
Methyltransf_4
Methyltransf_12
Methyltransf_11
Methyltransf_32
DOT1
BPA
Motif
Other DBs
NCBI-ProteinID:
BET57827
UniProt:
A0AA86JJX4
LinkDB
All DBs
Position
complement(978568..979905)
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AA seq
445 aa
AA seq
DB search
MPDERVRARLTHMGNKHFHAETVEVLTPSRTRLSQIPCTRVGSCDGCPLIVMHYPDQLNW
KRTFTERQIRRYQTLGAAEVLETLPSPNQLHYRNSAKLVVSGTFRRPVIGIYRRNSHQVM
DIGACPLHHPLINQVVTAVKEGIAKCKVQVYNPRTGSGILRYLVVRISERTGTAMAVFVT
VDRNYNEIHHLAKHLQQRVPQVEVVVQNVNSSEGNVILGQRDYFLTRQRALTEELGGIRF
TISPRSFFQVNSGGARIIYETVRQWSSLTGKESVVDLYCGIGGIALFLAGTAREVHGIEV
VEAAVNDAESNARLNRIHNCSFEAGDAAELLEELVEEGERLDLVVLNPPRKGCDAGVLNK
VAAAGPARIIYVSCAPATLARDLDILAGLGYATLRVQPVDMFPQTPHVENIALLVKELPR
NDRLESPAKELSRPRRHHKTKGGAV
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
ttgcctgatgaacgggtacgggcacgcctcacccacatgggcaataagcacttccatgcc
gaaacagtcgaggtgctcaccccctcgcggacaaggctctcacagataccctgcaccagg
gtcggcagttgcgacggctgtccgctgatcgttatgcattatccggaccagctaaattgg
aagcgcaccttcaccgagcgtcagatccgccgctaccagacgttgggcgctgcggaggtg
ctggagacactcccctcccccaatcagcttcactatcgcaactcggcgaaactggtggtt
tctggaacgttccgccgcccggtgatcggtatctaccggcgcaacagtcatcaggtcatg
gatatcggcgcctgccccctccaccaccctcttatcaaccaggtcgtaacagccgtaaag
gagggaatcgccaagtgcaaggtccaggtctacaatccgcggaccggaagcggcattctc
cgttatctggtggtacggatttcggagcggacaggcacggccatggcggttttcgtcacg
gtcgaccgcaactacaatgaaatccaccacctggcgaagcacctgcagcagcgcgtcccc
caggttgaggtagttgtccagaacgtcaactcatcggaggggaatgtcatcctcggacaa
cgggactacttcctgacccgccagcgtgctcttacggaggagttgggcggcatccgcttc
accatttcacccaggtccttttttcaggtaaacagcggcggggcccggatcatatacgag
acggtccgccaatggagcagcctgaccggcaaggagtccgttgtcgatctctactgcggc
atcggcggcatcgcactcttcctcgcaggtacggcccgcgaggttcacggcattgaagtg
gtggaagcggcggtgaacgacgccgaaagcaatgcccggctgaaccgcatccacaactgc
agcttcgaggcgggtgatgcagccgaactgcttgaggaactcgtggaggagggtgaacgt
cttgacctggtcgtactcaatccgccgcgaaagggatgtgacgctggcgttctcaataaa
gttgccgcagccgggcctgcgcggataatctatgtatcttgcgcccctgccaccctcgcc
cgcgacctggacatcctcgccggcctggggtatgccactctccgggttcaacccgtcgac
atgttcccccagaccccgcacgtggagaacatagccctgctggtcaaggagttgccgcgc
aatgaccggcttgagtcgccggccaaggagctcagccgcccccggcgccaccacaagaca
aaagggggagccgtctga
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