Geobacter sp. 60473: GEO60473_09670
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Entry
GEO60473_09670 CDS
T10337
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
gec Geobacter sp. 60473
Pathway
gec03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GEO60473_09670 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gec03400
]
GEO60473_09670 (recB)
Enzymes [BR:
gec01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GEO60473_09670 (recB)
DNA repair and recombination proteins [BR:
gec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GEO60473_09670 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
BET57927
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All DBs
Position
1085383..1088997
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AA seq
1204 aa
AA seq
DB search
MTSLRPHDNLTVELSGHNLVEASAGTGKTFAIACLYLRLVVEGEGLLPENILVVTFTEAA
TKELRARIRQRLRQARDRFAGGGAPDEFLDRLALGERWPGHATALSRIDSALQTFDCAAI
STIHGFCLRALQENAFESGSLFDTELAADQEPLLRQVADDFWRRHFFGADAPLLPLALGQ
RWSPEELAAFLRNIAGKPHLAVEPVWHSGEADRVAGEIRDAFAALSSLWRTQREEVAAIL
AADPGLSRSKSNYHPDLVPGLLAAMDGYAAGADPYALFAGFDKFTAGFLAGQRLKKADPP
RHDCFDLCDRLARLTSQRLLLLKAEFAALGRERLAALKAQRNVRGYDDLLTDLHAALDGP
GGAALADRLRERYRAALIDEFQDTDQVQYRIFRAVFSGGAVPLFLIGDPKQAIYSFRGAD
VFAYLEARQEIPAERCFTMDRNWRSTPEMVDAVSSLFRMGGEHPFLAGDIAFPPVTAARR
QGCSFGDRDPAPLQLWFIRRGEGDRDCINLGTGRQRIVTAVADEISGLLADGRDGTACLE
DEDGRMQPLTPGDVAVIVRSHFEAGLVQQALRERGIPSVVQSADSLFETREAGEVWTVMG
AVAEPGNEGRVRAALVTALFGLNGNDLALLMEQEAAWEERIAAFRDYRDLWRERGFMTMF
RALLDREGVRERCLPLPDGERRLTNLRHCAEVLHQAAVERRLGPDALTAWFGERVSVPPP
GEDYQIRLESDDRAVRIVTVHVSKGLEYPVVFAPFMWGGLRDDGDLTLCHEEDYRLVADF
GTERRDERRRRARTEALAENLRLLYVALTRARCRAYLVWGKFRGAETSAPGWLLHGSRPD
GTGDPVAQLEETLKKATDQTLLERLDHLATASGGGIAVTEDPCPDRLPRFRPAGGEAPLV
CREFRGDIDAGWRVASFTSFASGHRETAELPDRDQTPPELPTDATSDTAAPPEGSMFAFP
RGPRAGIFLHGLFEQLDFAVAGDDAVRDLVRRELERNGHGAQWLDPVSRMVGNVLNVPLG
GEGNSFRLADLAPGSWLAELEFYFPLRFVRDAQVATILAGAGVLPQGADLGEVARRIAFG
EARGMVRGFMDLVFRHGGRYYLIDWKSNHLGNRAEDYGPERLCREMERSLYPLQYLLYTV
ALNRFLERRLPGYRYEEHFGGVFYLFLRGIDPERPALGVYHDLPRPDLVRALTDCLAGRE
GGAP
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
gtgacttccctgcgaccccatgacaatctgaccgtggaactgtccggccacaacctggtg
gaagccagcgcaggcacgggcaagacctttgccatagcctgcctctacctgcgcctggtg
gtggaaggggaggggctgctccctgaaaacatcctggtggtgaccttcaccgaggcggcc
accaaggagctgcgcgcccgcatccgccagcggctgcgccaggcccgcgaccggttcgcc
ggcgggggcgcgccggacgagttcctcgaccggctggccctgggcgagcgctggccgggg
cacgccacggccctgtcccggatagacagcgcactccagaccttcgactgcgccgccatt
tccaccatccacggcttctgcctccgggcgctccaggaaaacgccttcgagagtggttcc
ctgttcgacaccgaactggcggcggaccaggaaccgctcctgcgccaggtggcggacgat
ttctggcgccgccacttcttcggcgctgacgcgccactgctccccctggccctgggccag
cgctggtccccggaggaactggcggcattcctgcggaacattgccggcaagccccacctg
gccgtggagccggtctggcattccggggaggcggaccgcgttgccggggagatccgggac
gcctttgccgcgctctcgtccctctggcggacgcaacgggaggaggtcgccgccatcctg
gccgccgatcccgggctaagccgctccaagagtaactatcacccggacctggtgccgggc
cttctggccgccatggacggctacgcggccggcgcggacccctacgcgctctttgccggg
ttcgacaagttcaccgccgggtttctggccgggcagcggctcaaaaaggccgacccgccc
cggcacgactgcttcgacctctgcgaccgcctggcacggctcacctcccagcggcttctg
ctcctgaaggccgagttcgcggccctaggccgggagcggctggccgcgctcaaggcgcag
cgcaacgttcgggggtatgatgacctgctcacggacctccacgccgcactcgacgggccc
ggcggcgctgccctggctgatcggctgcgggagcgttaccgggccgccctcatcgacgag
tttcaggacacggaccaggtccagtaccggatcttccgggcggtgttcagcggcggcgcg
gtgcccctgttcctgatcggcgaccccaagcaggccatctacagctttcggggagccgat
gtcttcgcctacctggaggcccgacaggagatcccggcggagcggtgcttcaccatggac
cgcaactggcgctccacgccggagatggtcgatgcggtgagctccctgttccgaatgggg
ggggagcacccgttcctggccggcgacatcgcttttcccccggtcacggcggcccggcgg
cagggttgctccttcggcgaccgcgatccggcgccgctccagctctggtttatccgccgg
ggcgagggtgaccgcgactgcatcaacctgggcacgggccggcagcggatcgtcaccgcc
gttgccgacgagatctccgggctcctggccgacggccgcgacggcacggcctgcctggag
gacgaggatgggcggatgcagcccctcacccccggcgacgtggccgtcatcgtccggtcc
cacttcgaggcgggcctggtccagcaggccctgcgggagcggggcatcccctccgtggtc
cagagtgccgacagcctgttcgagacccgcgaggccggcgaggtctggaccgtgatgggg
gccgtggccgagcccgggaacgaggggcgggtcagggcggccctggtcacggcgctcttc
gggctgaacggcaacgacctggcgcttctcatggagcaggaggcggcctgggaagaacgg
atcgccgccttccgcgactaccgcgacctctggcgggagcggggcttcatgaccatgttc
cgcgccctcctggatcgggagggggtgagggagcggtgccttcccctgcccgacggggaa
cggcggctcaccaacctgcgccactgcgccgaggtgctccaccaggcggccgttgagcgg
cgtctcggccccgatgccctgacggcgtggttcggggagcgggtgagcgtgcccccgccc
ggggaggattaccagattcggctcgaatcggacgaccgggcggtccgcatcgtcacggtc
cacgtcagcaaggggcttgagtatcccgtggtctttgcccccttcatgtggggcggtctg
cgggatgacggggacctgaccctctgccacgaggaggactatcggctggtggcggatttc
ggtaccgaacgccgggacgagcggcgccgccgggcccgcaccgaggccctggccgagaac
ctccgcctcctctatgtggccctcaccagggcccgctgccgcgcctatctggtctggggc
aagttccgcggcgccgagacctcggccccgggctggctcctccacggcagccggcccgac
gggacaggcgacccggtggcacaattggaagaaaccctgaagaaggcgaccgaccagacc
ctgctggagcggctcgaccacctggcaacggcaagcggcggaggcattgccgtgaccgaa
gacccgtgcccggaccggctgccccgcttccggccggccggtggagaggcgccgctggtc
tgccgtgagttcaggggcgacatcgacgcgggctggcgggtggccagcttcacctccttt
gcctcggggcaccgggaaaccgccgagttgccggaccgggaccagaccccgccggagctt
ccgaccgacgccaccagtgacacggcagccccgcccgagggctccatgttcgcctttccc
cgggggccccgggccggcatcttcctgcacggcctcttcgaacagctcgattttgccgtt
gccggcgacgatgccgtgcgggacctagtccggcgcgaactggagcgcaacggccatggc
gcgcagtggctcgacccggtgagccgcatggttggcaacgtcctgaatgttcctctgggc
ggggaggggaattctttccgtctggccgacctggcccccggcagctggctggcggagctg
gagttctatttcccgctccggttcgtgcgggacgcccaagtggcaaccatcctggccggg
gccggggtgctcccccagggggccgacctgggggaggtggcgcgccggatcgccttcggc
gaggcccggggcatggtgcgcggcttcatggacctggtgttccgccacggcggccgctac
tacctgatcgactggaaatcgaaccacctggggaaccgggccgaggattacggccccgag
cgcctctgccgggagatggagcgctccctctatccgctccagtacctgctctacaccgtg
gccctcaaccgcttcctggagcgccgcctgcccggctatcgctacgaggagcacttcggc
ggagtgttctacctgttcctgcgggggatcgatcccgaacgccccgccctgggggtctat
catgacctgccgcggcccgacctggtgcgggcattgaccgactgcctcgccgggcgggaa
ggaggagcgccgtga
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