Geobacter sp. 60473: GEO60473_10260
Help
Entry
GEO60473_10260 CDS
T10337
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gec Geobacter sp. 60473
Pathway
gec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GEO60473_10260 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gec03019
]
GEO60473_10260 (pnp)
03016 Transfer RNA biogenesis [BR:
gec03016
]
GEO60473_10260 (pnp)
Enzymes [BR:
gec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
GEO60473_10260 (pnp)
Messenger RNA biogenesis [BR:
gec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GEO60473_10260 (pnp)
Transfer RNA biogenesis [BR:
gec03016
]
Prokaryotic type
tRNA degradation factors
GEO60473_10260 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_NusA_2nd
S1_RRP5
KH_2
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
BET57986
LinkDB
All DBs
Position
1149975..1152083
Genome browser
AA seq
702 aa
AA seq
DB search
MMEHTMTEHKVNVEFGGRIITIATGKWAKQASGAVVVSCGDTVVLVTAVATKSAREGQDF
FPLTVNYQEKAYAGGKIPGGFFKREGRPSDNETLTCRFIDRPIRPLFPESFLNDTQIMAT
VVSADQDNDPGILAMIGASAALEVSDIPFLGPIAGVKVGRVDGQFVCNPTVEQLEKSDLE
IVVAASRDAVIMVEGGAAEASEKDVLEAIFFGHAAVQPIIEAQTDLRKLAGVPKREVAAK
SVDEALKARVKDLAYAGIKEAVRIVAKQERHNRISEITAQTLETLLPEYEGRESEIKGFL
GDFEYELVREHIIKDGYRIDGRDTTTIRPISIEVGMLPRAHGSALFTRGETQALVASTLG
TSIDEQRIDSLYGETRKRFLLHYNFPPFSVGETSFRLAPGRREIGHGMLAERALERVVPK
HEDFPYTIRIVSDILESNGSSSMATVCGGALAMMDAGVPIKAPVAGIAMGLIKEGEGIAI
LSDILGDEDHLGDMDFKVAGTETGVTAIQMDIKITGVTREIMEKALLQARDGRLHILGKM
NQSIAAPRTDLSPYAPRITTIWVKTDKIRDVIGAGGKNIRGITEATGVSIDIEDSGRINI
ASTSKEACDKAIKMIRDLTAEAEEGKLYMGTVKKVMDFGAFVEIFPGTDGLVHISELDTE
RVKNVTDVLNEGDKVLVKCIGIDKQGKIKLSRKEALGAVLPE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgatggaacacactatgactgaacacaaggttaacgtagaattcggcgggcggataata
acgatcgcaacgggtaagtgggccaagcaggccagtggcgccgtggtggttagctgcgga
gacacagtggttctcgtgactgctgtagcaaccaagtcggcccgcgaaggacaggacttt
ttccctctgacggtgaattatcaggagaaagcgtatgccggcggcaagattcccggcggc
ttcttcaagcgtgaagggcgtccctccgacaacgagactctcacgtgccgctttatcgat
cgtccgatccgtccgcttttccctgagagttttctgaacgatacccagatcatggcgact
gtcgtctcggcggaccaggataacgatcccggcatccttgccatgatcggcgcgtctgct
gcccttgaggtctccgatataccgttcctcggccccatcgccggcgtcaaggttgggcgc
gtggacggccagttcgtatgcaatcccacggtagagcaactggagaaaagcgatcttgaa
atcgttgttgcggcgagccgcgatgcggtcatcatggtagaggggggggctgcagaggcg
tccgaaaaggatgtcctggaagctattttcttcggtcacgccgctgttcagccgattatt
gaggcccagaccgatctccgtaagctggctggtgttcccaagcgcgaggttgcggccaag
tctgttgatgaggccctgaaggctcgggtcaaggatcttgcctatgccggtatcaaggag
gccgtccggatcgtcgccaagcaggaacgtcacaaccgcatcagcgagatcactgcgcaa
acccttgaaacacttctgcccgagtatgaaggccgcgaatcggaaattaaggggttcctc
ggcgacttcgagtatgaactcgtccgtgagcacatcatcaaggatggctaccgcattgac
ggtcgggataccacaaccatccgtcctatcagcattgaggtcggcatgctgccgcgtgcc
cacggctccgctctcttcacccgtggtgaaacccaggcgctcgtggcatcaactctcggg
acttccattgacgaacagcggattgattcactgtacggcgagacccgcaagcgcttcctc
cttcactacaacttcccgccgttctcggtcggggaaacgagcttccgccttgctcctggc
cggcgcgaaatcggccacggcatgctggccgaaagagctcttgagcgcgtcgtacccaag
cacgaggatttcccgtacaccatcagaattgtctccgatatcctcgagagcaacggttcc
tcctccatggcaaccgtgtgcggcggcgcactggcgatgatggatgcaggcgtgccgatc
aaggctccggtggccggtatcgccatgggcctcatcaaggaaggggagggcatcgccatc
ctttctgacattctcggtgatgaggatcatcttggcgatatggatttcaaggtggccggc
accgaaacaggggtaaccgccatccagatggacatcaagatcaccggtgtcactcgcgag
atcatggagaaagcactgctgcaggcccgtgacggcagactccacatcctgggcaagatg
aatcagtccattgccgctccgcggactgatctctcaccctatgctccccgcatcaccacc
atctgggtcaagaccgacaagatccgcgacgtaatcggggccggaggaaagaacatccgc
ggcatcaccgaggcgaccggcgtatccatcgatatcgaggacagtggccgcatcaatatt
gccagcaccagcaaggaggcctgcgacaaggctatcaagatgattcgtgacctcacggcc
gaggccgaagagggcaagctctacatgggcaccgtcaagaaagtcatggatttcggcgca
ttcgtggaaatcttccccggcaccgacggacttgtccatatatccgaactggacaccgag
cgagtgaagaacgtcaccgatgtgctcaatgagggcgacaaggtgctggtgaagtgtatc
ggtatagacaagcagggcaagataaagctgtcgcggaaagaggcgctcggcgccgtactg
cccgaatag
DBGET
integrated database retrieval system
