Geobacter sp. 60473: GEO60473_11140
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Entry
GEO60473_11140 CDS
T10337
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gec Geobacter sp. 60473
Brite
KEGG Orthology (KO) [BR:
gec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gec03016
]
GEO60473_11140
Enzymes [BR:
gec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GEO60473_11140
Transfer RNA biogenesis [BR:
gec03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GEO60473_11140
Prokaryotic type
tRNA splicing ligases
GEO60473_11140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BET58074
LinkDB
All DBs
Position
complement(1247888..1249345)
Genome browser
AA seq
485 aa
AA seq
DB search
MAAPAALKRISATVWELPVSYKQGMLVPARIIATEKLINAMDAGVFEQVSNVACLPGIQK
YAFCLPDGHWGYGFPIGGLAAMDPETGVISPGGIGFDINCGMRLVLTTLTYEEVKPRLRE
LVDALFYRVPAGVGSHGFVRLSHDEFCRVAEQGSSWCLKHGYAWPEDLEMTEEHGCFTGA
DATKVSQRAVDRGYNQIGTLGSGNHYLEIQVARPENIFDEDTARAFGITVPNQVVIMFHC
GSRGFGHQVATDYLQLFLSVMEKKYGIRTNDRELACAPFRSREGQDYFAAMKCAVNMAFA
NRQVILHRIREVFSDVFGRDPRDLGMDMVYDVAHNTAKLETHLVDGKQRELLVHRKGATR
AFGPGMEGIPARYRETGQPVIIGGSMETGSYLLAGDPGGGDTFFTTAHGSGRTMSRHQAK
KLVKGQKLQRDMEERGIYVRTASWGGLAEEAGQAYKNIDDVAEATELSHLSRRVARLVPI
GNVKG
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggcggcaccggcagcgctgaagagaatatctgcaacggtttgggagcttcccgtatcc
tacaaacagggaatgctcgttcccgcccgcatcattgccacggagaaactcatcaacgcc
atggatgcgggcgttttcgagcaggtatccaacgtggcctgcctgcctggcatccagaaa
tatgccttctgcctgcctgacggccattggggatacggctttcccatcggcgggctggcg
gccatggacccggaaacaggggtcatttcccccggcggcattggcttcgatatcaactgc
ggcatgcggctggttctgaccactcttacctacgaagaggtaaagccgcgcctgcgcgaa
ctggtggatgccctcttctaccgggtgccggccggggtcgggagccacggttttgtgcga
ctctcccacgacgaattctgccgcgtggccgagcagggctcctcctggtgcctgaaacat
ggctatgcctggcccgaagacctggagatgaccgaagagcatggctgcttcaccggagcc
gatgccacgaaggtcagccagagagccgttgaccggggatacaaccagatcgggaccctc
ggctcgggcaaccactacctggaaatccaggtggcccgccccgagaacattttcgacgag
gataccgcccgggcattcggcattaccgtaccgaaccaggtggtgatcatgttccactgc
ggcagccgcggcttcggccaccaggtggccaccgactatctccagcttttcctgtcggtc
atggagaaaaagtacggcatccgcaccaatgaccgcgaacttgcctgcgcccccttccgc
tcccgcgaggggcaggactactttgccgccatgaagtgcgcggtgaacatggcctttgcc
aatcgccaggtcatcctccatcgcatccgcgaggtcttctcggacgtattcggtcgcgac
ccgcgcgatctgggcatggatatggtctatgacgtggcccacaacaccgccaagctggag
acccacttggtggacgggaaacaacgcgaactgctggttcatcgcaagggggccacccgg
gcctttggccccggcatggaggggattcccgcccgctaccgggaaacgggccagccggtc
attatcggcggcagcatggaaaccggctcctatctgctggcaggcgacccgggaggcggt
gacacctttttcaccaccgcgcacggcagcggccggaccatgagccgccatcaggcgaaa
aagctggtcaaggggcagaaactgcagcgggatatggaggagcgcggcatctacgtgcgg
accgcgtcctggggaggactggccgaagaggcggggcaggcctacaaaaacattgacgac
gtggccgaggccacagagttgtcgcatctgagccggcgggttgcacggctcgtgcccatc
gggaatgtcaaaggttga
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