Geobacter sp. 60473: GEO60473_12870
Help
Entry
GEO60473_12870 CDS
T10337
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
gec Geobacter sp. 60473
Brite
KEGG Orthology (KO) [BR:
gec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gec03019
]
GEO60473_12870 (hrpB)
Enzymes [BR:
gec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GEO60473_12870 (hrpB)
Messenger RNA biogenesis [BR:
gec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GEO60473_12870 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
CON_HrpB
Helicase_C
HA2_N
HA2_C
ResIII
Flavi_DEAD
AAA_30
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BET58247
UniProt:
A0AA86JKP0
LinkDB
All DBs
Position
complement(1428867..1431407)
Genome browser
AA seq
846 aa
AA seq
DB search
MNRLPVDDVIPDLLTALEQRNAAVLQAPPGAGKTTRVPLALLDAPWLNGKRIIMLEPRRL
AATNAARWMARSLGEEAGATVGYAIRFDRRVSARTRVEVVTEGILTRRLQSDPLLEGVGA
VIFDEFHERSIHSDLALALCRDVQAGLREDLRIIVMSATMAAAPVAALLGDAPVITSEGR
NHPVVLRHIPPNDRENLPSAVARAVRIAARECEGDILAFLPGVGEIRRCGQLLADDPPLH
APLVVPLYGDLPFVEQERAILPVPGRRKVVLATTIAETSLTIEGVRVVVDGGQTRRLRYD
PASGLNRLVTERVSAASATQRAGRAGRLGPGTCYRLWPEHNQQALLAADPPEILIADLAP
LALDLAHWGVSDPASLAWLDPPPRGALEEARNLLKSLDALDGQGMITETGRRMAELPLHP
RLAHMLLRATERGLAPLACDVAALLTERDIVRPAGTGQATERAGCDMLIRVEALEQWRQG
RGGRDHQVDSSACRAVDRVASHLRRLIAPDGKGHAVADPVRETGLLLSWAYPDRIAQARP
GGERRYLLANGRGALLSERSSLHGEQLLVAYLVERGERGDDLIRQASALDPARFHEEFSG
DIYRRRTVVWDDREGRVIARDEVCYGAIVLESRPVSATGDEVRAALLTGLRVGPGITALG
WPPAVRQFRARVRFLGRVCPVDGWPDLSDERLLETIEVWLGPFLGKARSLADLASIDLLT
PLKALLSWDQLRRLDEGAPTHLTVPSGSRISLAYDAEGAPTLAVKLQEMFGCADTPAVAW
GRVPVVVHLLSPAGRPLQVTSDLRGFWNGAYQEVKKEMRGRYPKHPWPDDPWSAVPTRRT
KRSGEG
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgccttcccgttgacgacgtcatccccgacctgctgacggcccttgagcagcgg
aacgccgcagtacttcaggcgccgccgggggccgggaaaaccacccgcgttcccctcgcg
ctccttgacgctccctggctgaacggcaaacggattatcatgctggaaccgcgccggctg
gccgcgacgaatgctgcccgctggatggcccgcagtctgggggaggaggcgggcgccaca
gtggggtacgccatccgcttcgaccgccgggtgtctgcccgaacccgggtggaagtggtg
accgaaggaatcctcacccgtcgactccagtccgatccgctccttgagggggtcggtgcg
gtgatcttcgacgagttccacgagcggagcatccattcggatctggccctcgccctctgc
cgcgatgttcaggcagggctgcgggaggacctgcggatcatcgtcatgtcggcaaccatg
gctgcggcgccggtcgcggccctgctcggcgacgcaccggtcatcaccagcgaggggcga
aaccaccccgttgtgctgcggcatattccgcccaacgaccgggagaacctcccctcggcc
gtggcgcgcgccgtccggattgcagcgcgcgagtgcgaaggggatatcctcgcgtttctc
cccggcgtcggagagatcaggcgctgtggccaactgctcgctgatgatccgccgttgcat
gccccgctggtggtgcccctctacggcgatctgccgttcgtggagcaggagcgggcgatt
ctgccggtccccggccggcgcaaggtggtgctggcaacaaccattgccgaaacgagtctc
accatcgaaggtgtccgcgtggtggtggacggtggccagacccggcggctgagatatgat
ccggcctcggggctgaaccggctggtcaccgagcgggtttccgccgcatcggcgacccaa
cgggccggtcgggccggccgcctgggaccgggaacctgctaccgcctctggccagagcat
aaccagcaggcgctcctggcggcagatcccccggaaatcctcattgccgatctggctccg
ctggccctcgacctggcacactggggggtaagcgatcctgcgtcccttgcctggctcgat
cctcctccccgcggggcactggaggaggcgagaaaccttctgaagtccctcgatgccctt
gacggccaggggatgataaccgaaacgggacggcgcatggcggagttgccgctccatcct
cgtctggcccatatgttgctgcgcgcgaccgagcgcgggctggcacctcttgcgtgcgac
gtggccgcgctgctcacggagcgggacatcgtgcgtcccgccgggaccggtcaggccacc
gaacgcgccggctgcgacatgctcatccgggtagaggcccttgaacagtggcggcaggga
aggggggggagggatcaccaagttgattcttcagcctgccgggcagtggaccgggtggca
tcacacctgcggcgcctgattgccccggatggaaaggggcacgcggttgcggatccggtt
cgggaaacggggctgctgctttcgtgggcatatcctgaccggatcgcccaggcccgtccc
gggggcgaacggcgctatcttctggccaacggcagaggggccttgttgtcggaacggagt
tccctccacggggagcagttgctcgtggcctatctggtggagcgcggcgagcggggggac
gacctgattcgccaggcgagcgcccttgacccggcgcggttccacgaagagttctccggc
gacatctaccggcggcgcacggtggtttgggatgatcgcgaaggaagggtgatcgcccgg
gatgaggtctgctacggtgccattgttctggagagccgccccgtctccgccacgggcgat
gaggtccgtgctgccttgctgacgggactgcgtgtcggtccgggcataacggctctggga
tggccgccggccgtccgccagttccgggcacgggtccgctttctcggccgggtctgccct
gtcgacggctggcccgatctttccgatgaacgacttctggaaacaatcgaggtctggctc
ggcccctttctgggaaaggcccggagccttgccgacctggcgtctatcgatcttctgacg
cctctgaaagccctgctctcctgggaccagctccgccgcctcgacgagggggcacccact
cacctgacggtgccgagcggttcgcggatttccctggcgtacgatgcggaaggggctccg
accctggcggtgaagctgcaggaaatgttcgggtgcgccgatacccctgccgtggcctgg
gggcgggtcccggtggtggtacacctcctgtcccccgccgggcgtcccctgcaggtcacg
tccgatctgcgcggcttctggaacggggcgtatcaggaggtcaaaaaagagatgcgggga
cgctaccccaagcatccctggcccgacgatccctggagcgcggtgccgacccgcaggacc
aaacggtcgggagaagggtag
DBGET
integrated database retrieval system
