Geobacter sp. 60473: GEO60473_13380
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Entry
GEO60473_13380 CDS
T10337
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
gec Geobacter sp. 60473
Pathway
gec02020
Two-component system
gec02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
gec00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GEO60473_13380 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GEO60473_13380 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gec03021
]
GEO60473_13380 (rpoN)
Transcription machinery [BR:
gec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GEO60473_13380 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4_2
HTH_3
DUF5812
Motif
Other DBs
NCBI-ProteinID:
BET58298
LinkDB
All DBs
Position
complement(1490578..1492023)
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AA seq
481 aa
AA seq
DB search
MAIEMRQQMKMTQQLVMTPQLQQAIKLLQLSRLELQDLVRQEMEENPLLEESLEAEEVKE
QDLVELSEKEDAPAPAEQDFREVTTGEETRESDWDSYLEGYNYSSGEQYYDDEDRPSYEN
ILTRKGTLADHLMWQLNMTKLSDEEARAGAEIIGNMDEDGYLRATVEEVALACSVSESVV
ESALKKIQEFDPMGVGARNLRECLLIQVEQLGMAGSVVDGILRNHLHDLETRKYKQIAKS
LGVDVDSILMAAKIIAGLDPKPGRVYGSEDVHYISADIFVYKIADDYVVVLNDEGLPNLR
ISPFYAGEIKNGAAVDAKAEEYISEKSRSAMWLIKSIHQRQRTIYKVAKSIVKFQREFLD
RGIEYLRPLVLRDVAEDIGMHESTISRVTTNKYMQTPQGLFEMKYFFNSGISTTEGDFIA
SESVKNKIKEIVDAEDPRKPYSDQRIAELLSAHTINIARRTVTKYREMLKIGSSSERKRH
F
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggccattgaaatgcgccaacaaatgaagatgacccagcagctggtgatgacgccccag
ttgcagcaggccatcaaacttctccagctgtcacggctggagcttcaggatctggtccgc
caggagatggaagagaatccgcttctggaagagtctctggaggctgaagaggtcaaggaa
caggacctggtcgaactttccgaaaaggaggatgctcctgctccggctgaacaggatttc
cgcgaggtcaccacgggggaagagacccgcgagtcggactgggacagctaccttgagggt
tacaattacagttccggcgagcagtactatgatgatgaagaccgtccctcctatgaaaac
atcctgacccgtaaaggaacccttgccgatcatctcatgtggcagctcaatatgaccaag
ttgagcgatgaagaggcgcgggccggcgcggagattatcggcaacatggatgaagacggc
tacctgcgcgccacggttgaggaagtcgccctggcatgctccgtaagcgaatccgtggtg
gaatcggccttgaagaagatccaggagttcgaccccatgggggtgggggctcgtaacctg
agggaatgtctcctgatccaggtggaacaactcggcatggcggggagcgttgtggacggc
atcctccgcaatcacctccacgacctggagacccgcaagtacaaacaaattgccaagtct
ctcggggtcgacgtggacagcatcctgatggccgccaagattatcgccggcctggacccg
aaaccgggccgcgtctatggctccgaagatgtccactacatttcggccgatatctttgtc
tataaaatcgctgacgactatgtcgtcgtgcttaatgacgaaggccttcccaatctgaga
atcagccccttttatgccggcgagatcaagaacggtgccgctgtcgacgccaaggccgag
gagtacatcagcgaaaagtcccgctccgccatgtggctcatcaagagcatccaccagcgg
cagagaaccatttacaaggttgcgaagagcattgtgaagttccagcgtgagtttctcgac
cgcgggatagaataccttcgccccctggtgctcagggacgtagccgaggatatcggcatg
cacgagtcgaccatcagccgcgtcaccaccaacaagtacatgcagaccccccagggactt
ttcgagatgaagtattttttcaacagcggtatatcaaccaccgaaggagacttcatcgct
tcagagagcgtcaagaacaagatcaaggaaatcgtcgacgccgaggatccccggaagccg
tacagcgaccagcgtattgccgaattgctttcggcacacaccatcaatatcgcccggcga
accgtcacaaagtatcgcgagatgttgaaaatcggctcatcatccgagcgtaaacgtcat
ttttga
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