Geobacter sp. 60473: GEO60473_17670
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Entry
GEO60473_17670 CDS
T10337
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
gec Geobacter sp. 60473
Brite
KEGG Orthology (KO) [BR:
gec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gec03019
]
GEO60473_17670
Messenger RNA biogenesis [BR:
gec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GEO60473_17670
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Ortholog
Paralog
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
Cas3_HD
HDOD
Motif
Other DBs
NCBI-ProteinID:
BET58727
LinkDB
All DBs
Position
complement(2003334..2004461)
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AA seq
375 aa
AA seq
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MSKVFIASIRDRDLVDSVFLVKEKIMAMAKNGKPYMTLRLMDKSGEIEGRVWDNVDQLSA
SFGKDDFVAIRSKASVYLGKMQLIISELVRIPDDRVNLADFLPESDRTIAEMESELKALV
ETFSDQYLKALMKAFFDDPAFMALYRTAPAAKGMHHVYLGGLLEHSLAVSRLVDAIVPLY
TDLNRDLLVAGALLHDVGKVREMTYLRSFDYTDEGKLIGHITIGVEMLQERISTIPGFPP
ELGMLLKHMLLSHHGQYEYGSPKRPKTVEATILNYLDDLDSKINGIRTHIRKESENLGRW
TSYHRLYDRYFYKESYNGEEEYRDGTDEMMVPEPEPVPLPAAPQAAMAERKGGDTARKGF
SNNPFETLQKNLDLF
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaggttttcatagcgagcatccgtgaccgcgatctggtcgattccgtgtttctc
gtgaaggaaaagatcatggccatggccaagaacggcaagccctacatgacgcttaggctc
atggacaagagcggcgagatcgagggccgcgtctgggacaacgttgaccagttgtcggcc
tccttcggcaaggatgacttcgttgccatccggtccaaggcctcagtctacctgggcaag
atgcagctcatcatttccgaactggtgaggattcccgatgaccgggtgaacctggcagac
tttctccccgagtcggaccgtaccattgccgagatggagagcgaactcaaggccctggtg
gaaaccttttccgatcagtacctgaaagcgctgatgaaggcctttttcgacgatcctgcc
ttcatggcgctctatcggaccgcgccggccgccaaggggatgcaccatgtctacctgggg
gggctgctggagcactcactggccgtgtcccgcctggttgatgccatcgtccccctctac
acggatctcaaccgcgacctgctggtggcgggcgccctgttgcacgacgtgggcaaggtg
cgggagatgacgtacctgcgttccttcgactacaccgacgagggaaaactcatcggccat
atcactatcggcgtggagatgctccaggagcggatttcgaccatcccaggcttcccgccg
gagctggggatgctgctcaagcacatgctgctgtcccaccatggacagtacgaatacggt
tcccccaagcgtcccaagactgtcgaagcgacgattctcaactacctggacgatctggac
tccaagatcaacgggatcagaacccatatccgcaaggaaagcgaaaacctggggcgctgg
acctcctatcaccggctctatgaccgctacttctataaggagagttataacggcgaggag
gaataccgggacgggaccgatgagatgatggtgcccgagccggagcctgtaccgctgccg
gctgccccccaggccgccatggccgagcgcaaaggcggcgacaccgcccgaaaagggttc
agcaacaatccgttcgagaccctgcaaaagaatctggatctgttctga
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