Geobacter sp. 60473: GEO60473_19690
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Entry
GEO60473_19690 CDS
T10337
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gec Geobacter sp. 60473
Pathway
gec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GEO60473_19690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gec03019
]
GEO60473_19690
Enzymes [BR:
gec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GEO60473_19690
Messenger RNA biogenesis [BR:
gec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GEO60473_19690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_RecD
AAA_22
Flavi_DEAD
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
BET58929
UniProt:
A0AA86MDQ2
LinkDB
All DBs
Position
complement(2228080..2229420)
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AA seq
446 aa
AA seq
DB search
MDFTSFGFHPAVAGGVAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPIL
HRLQQGERGRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLKAG
AEVVVACPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPSRRQTLL
FSATMPIDIRKLAQDILLDPVTVQVGNVAPAVTVTHALYPVEQHLKTPLLMELLRHTDTE
SVLIFTRTKHRAKRLGEQLEKTGYRAASLQGNLSQNRRQAALDGFRDGTFQILVATDIAA
RGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDDGAMVRAIERSLGA
TIERRTVQGFDYSVPAPKKDVEFARPPREPRQARPHASQPKKGDVAASPSSGRPSHPKEP
GRRQPGQGTPASGPARQRPGSPRRPR
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggatttcacatcgttcgggtttcatccggccgtggccggaggggttgcggccgccggc
tacgagacccccacgccgatccaggcccaggccatccccgcggtcatggcggggcgcgac
gtcatggggctggcccagaccggcaccggcaagacagcggcctttgccctgccgatcctg
caccggctgcagcagggagagcgcggccgcgtccgggccctggtcattgcccccacccgc
gagcttgcggagcagatcaacgacagcttcgtcaccttggggcggcagacccgcctgcgg
agcgtgacggtctacggcggggtaggggtgaatccccaggtgcagaagctcaaggccggc
gccgaagtagtcgtggcctgcccgggacggctcctggaccacatcgcccaggggaccatc
gatctgtcgcgcctggaggtgctcgtcctggacgaggcggaccagatgttcgacatgggc
tttctccccgacatccggcgggtgctcaagcatctcccttcccgacgtcagacgctgctc
ttctcggccaccatgcctatcgacatccgcaaactggcccaggatatcctgctggacccg
gtgacggtgcaggtgggaaacgtggccccggcggtcaccgtaacccatgccctctacccg
gttgagcagcacctgaagacaccgctgctcatggagcttctccgccacacggacaccgag
tcggtgctgatcttcacccgcaccaaacaccgggccaagcgactgggcgaacagttggaa
aagaccggctaccgggcggcatccctccaggggaatctttcccagaaccggcggcaggca
gccctggacggtttcagggacggaaccttccagatcctggtggctaccgatattgcggcc
cgcggcatcgacgtgagtcaggtgtcccacgtgatcaactacgatatccccgacacggcc
gaggcatacatccatcgcatcggccgcaccggccgcgcggcccgcagcggagacgccttc
accctggtgacctccgacgacggggccatggtacgtgccatcgagcggagcctcggcgcc
accatcgagcgtcgcaccgtgcagggctttgactactcggtgccggcgccgaagaaggat
gtggagtttgcccgtccgccccgtgagccgcgccaggctcgcccccacgcaagccagccc
aagaaaggggacgtagcggcatccccgtcttccggccgcccgtcccatcccaaggaaccg
ggccggcggcagccgggtcaggggacgcccgcttcgggcccggcgcgccagcggcccgga
agtccccgccggccgcgctga
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