Geobacter sp. 60473: GEO60473_22580
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Entry
GEO60473_22580 CDS
T10337
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
gec Geobacter sp. 60473
Pathway
gec03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gec00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GEO60473_22580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gec03021
]
GEO60473_22580
03400 DNA repair and recombination proteins [BR:
gec03400
]
GEO60473_22580
Enzymes [BR:
gec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GEO60473_22580
Transcription machinery [BR:
gec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GEO60473_22580
DNA repair and recombination proteins [BR:
gec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GEO60473_22580
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
BET59218
LinkDB
All DBs
Position
complement(2531184..2532206)
Genome browser
AA seq
340 aa
AA seq
DB search
MYRNWRDLISPKKLQVESETLTNKYGKFYAEPFERGFGTTLGNSLRRVLLSSLQGAGITS
VRIKGVLHEFSSIPGVTEDVTNIILNLKGVSLKMYGTEPKTIRIIHKGDGIITAGDIITD
PQVEILNPEHHIATCSKDANLEMEMVVRVGKGYVPADRNRDEKAPVGTIPIDALFSPIRK
VNFTVSNARVGQMTDYDKLTLEVWTNGSVIPEDAVAFAAKILKEQLSIFINFDEEAEPSG
ESEVGEGESPINENLYRSVDELELSVRSANCLKNAGIKLIGELVSRTEAEMLKTQNFGRK
SLNEIKDILAEMGLTLGMKLEGFPDPEVMRRLRGERKDEE
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgtatagaaactggcgcgacctgatcagtccgaagaagcttcaggttgaaagcgagacg
cttaccaataaatatggaaaattttatgcagaaccgtttgagcgcggattcggcacgact
ctcggcaactcactccgcagggtattgctttcttcgctccaaggtgcaggaattacctct
gtaaggatcaagggggtgcttcacgaattttcttccatccccggcgtaaccgaggatgtt
accaatatcattctcaatctcaagggcgtaagcctcaaaatgtatggcactgagcccaag
accatccggattatacataagggcgacggcatcatcacggctggcgatatcattaccgac
ccacaagtcgagatcctgaaccctgaacaccacatcgccacatgctccaaggatgcaaat
cttgaaatggagatggtggtgagggttggcaagggttacgtgcctgcagaccggaatcgc
gatgagaaggctcccgttggcaccattccgatcgatgccctgttttcaccgatccgcaag
gttaactttacggtttccaacgcccgcgtcggtcagatgaccgattatgacaagctgacg
cttgaggtgtggaccaacggcagtgtgattccggaagacgcggttgcctttgcagccaag
atcctcaaggagcaactgagcattttcattaactttgacgaggaagccgaaccgagcggc
gagtctgaagttggcgaaggggaaagccccatcaacgagaacctctatcgttcggtcgac
gaactcgagctttccgtgcgctctgctaactgcctcaagaatgcaggcattaagctcatt
ggcgagcttgtgtcccggactgaggccgaaatgctcaaaacacagaacttcggccgcaag
tcactgaatgagatcaaggacatactcgctgaaatgggccttacgcttggtatgaaactg
gaagggttccccgatccggaagtcatgcgcaggctgcgcggcgagcgcaaggatgaagaa
taa
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