Geobacter sp. 60473: GEO60473_22890
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Entry
GEO60473_22890 CDS
T10337
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gec Geobacter sp. 60473
Pathway
gec03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gec00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GEO60473_22890 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gec03021
]
GEO60473_22890 (rpoC)
03400 DNA repair and recombination proteins [BR:
gec03400
]
GEO60473_22890 (rpoC)
Enzymes [BR:
gec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GEO60473_22890 (rpoC)
Transcription machinery [BR:
gec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GEO60473_22890 (rpoC)
DNA repair and recombination proteins [BR:
gec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GEO60473_22890 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
BET59249
UniProt:
A0AA86J6K3
LinkDB
All DBs
Position
complement(2549947..2554134)
Genome browser
AA seq
1395 aa
AA seq
DB search
MEDFFSFFDKPKDPLHFSAIRISISSPDKIRERSFGEVKKPETINYRTFKPERDGLFCAK
IFGPTKDYECNCGKYKRMKHRGIVCEKCGVEVIPSKVRRERLGHIDLATPVAHIWFLKSL
PSRIGNLLDISLKDLEKVLYFEAYAVTSPGETGLTMAEVLTEDRYLKAREEHGDRFEAGM
GAAAIRDCLKALELDQLAEQLRVEMMEATSEAKRKKTAKRLKVVEAFKESGNRPEWMILE
CIPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELQAPEVIIRNEKRMLQ
EAVDALFDNGRRGRAIAGPNKRPLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGPE
LRLHQCGLPKKMALELFKPFIYNKLEERGFVTTIKSAKKMVEKERPEVWDVLEEVIKEHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHLPLSIESQVEA
RVLMMSTNNILSPAHGKPIIVPSQDMVLGIYYMTRERNFAKGEGKIFSSPDEVRIAFDAG
EVDIQARVKVRMKNVQADEQELPEIIDTTVGRIILREILPEVIPYSAINKVMSKKELTNL
IDVCYRLAGNKETVILADRLKETGFRYSTLAGISICMNDMVIPEGKQVIIEKATEEVQEI
QNQYTEGLITDGERYNKVIDIWAKATEEIAKEMLDNLSKDTVVSPEGQEIKIPSFNSIHM
MADSGARGSAQQIRQLAGMRGLMAKPSGEIIETPITANFREGLNVLQYFISTHGARKGLA
DTALKTANSGYLTRRLVDVAQDAIITENDCGTLDGLVVSALTEGGEIIEHIGDRILGRVA
LDDILDPVTGEVLVAASQEIDENLVKKVEDSGLERVKIRSVLTCQSRRGICAKCYGRDLA
RGHLVNLGEAVGVIAAQSIGEPGTQLTMRTFHIGGTASRHAEQTSLEARTEGRVKFININ
SVINSEGHHIVMNRNGELAVVDETGREREKYVIVYGAKIKAGPDQVVKPGETLAEWDPYT
IPILTEVTGRIKFGDIVEGVTMEEQLDEVTGLSRKVIIESRDPDKRPRITIKDEAGKTVK
ISEIAMGRYFLPVGANISVQEDSFVNAGDVIAKIPRETTKTKDITGGLPRVAELFEARKP
KDFAVISEIDGLVTFGKDAKGKRKVIVTPEMGEPKEYLIPKGKHISVHENDYVRAGEALM
DGSSNPHDILRVLGLKELARYLVDEVQEVYRLQGVKINDKHIEVIVRQMLRRVRIKDVGD
TSFLIDDQLERSVFEEENDRVLTKGGRPAIAEPLLLGITKASLSTESFISAASFQETTKV
LTQAAIEGKVDSLRGLKENVIMGRLIPAGTGLSRYRNLKLVAEQAAVEEFELVEPVRPRD
DFDVDMEDDVDSFDE
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
ttggaagattttttcagcttttttgataaaccgaaggacccgcttcacttctcggccatt
cgcatatccatttcatccccggacaagatccgcgaacgctctttcggggaggtcaagaag
cctgagaccataaactaccggacgttcaagcctgagcgcgacggtctcttctgcgccaag
atattcggtcccaccaaggactatgagtgcaactgcggcaagtacaagcggatgaagcac
cgcggcatcgtctgcgagaagtgcggcgtcgaggtcatcccctcgaaagtgcgccgcgag
cgtctcggtcacatcgaccttgccacgcccgttgcccatatctggttcctcaagtcgctc
ccctcgcggatcggcaacctgctcgacatctctctcaaggatcttgagaaggtgctctat
ttcgaggcctatgccgtgaccagtcccggcgaaacgggccttaccatggctgaagtcctg
acggaagaccggtatctcaaggcccgcgaggagcatggcgaccgcttcgaggccggcatg
ggagccgcggcgatccgcgattgcctcaaggccctcgagctggaccagcttgccgagcag
ctccgggtggagatgatggaggcaaccagtgaggccaaacggaagaagaccgccaagcgc
ctcaaggttgtcgaggcgttcaaggagtcgggcaatcgccccgagtggatgatcctcgag
tgcattccggtcctgccgccggaactccgccccctggtgccccttgacggcggccgcttc
gccacctcggacctgaacgacctctaccggcgcgtcatcaaccgcaacaaccgtctcaag
cgtctcatggagttgcaggcgccggaggtcatcatccgcaacgagaagcggatgcttcag
gaagcggtcgatgccctgttcgacaacggccgtcgcggccgtgccattgccggccccaac
aagcgacccctcaagtccctttcggacatgctgaaaggaaaatcgggccgcttccggcag
aacctgctcggtaagcgggtcgactactcgggccgttccgtcatcgtcgtcggtccggaa
ctgcgcctgcaccagtgcggccttcccaagaagatggccctggagctcttcaagccgttc
atctataacaagctggaggagaggggcttcgtcaccaccatcaagagcgccaagaagatg
gtggagaaggagcggcccgaagtgtgggacgtgcttgaagaggtcatcaaggagcatccg
gtcatgctcaaccgggcaccgaccctgcaccgtctcggcattcaggcctttgagccggtg
ctcatcgaaggcaaggcgatccagctccatccgctcgtttgtaccgccttcaacgccgac
ttcgacggtgaccagatggcggttcacctgccgctttccatcgagagtcaggtggaagcc
cgcgtgcttatgatgagcaccaacaacatcctctcgcctgcccacggcaagccgatcatt
gtgccatcccaggacatggttctcgggatttactacatgacgcgcgagcggaatttcgcc
aagggcgagggcaagatattctcgtctcctgacgaggtccgcatcgctttcgacgcgggc
gaggtcgacatccaggcccgcgtcaaggtccggatgaagaacgtccaggccgatgagcag
gaactgcccgagatcattgacaccactgtcggccggatcattctgcgggagattctgccc
gaggtgattccgtactccgccatcaacaaggtgatgagcaagaaggagcttacgaacctg
atcgacgtctgctaccgtctggcggggaacaaggagaccgttatcctggccgaccggctc
aaggaaaccggtttccgctactcgaccctggcgggtatctccatctgcatgaatgacatg
gtgatcccggaagggaagcaggtgatcatcgagaaggcgactgaagaggttcaggagatc
cagaaccagtacaccgagggtcttattaccgatggcgagcgctacaacaaggttatcgac
atctgggcgaaagccacggaggagattgccaaggagatgctcgacaacctctccaaggac
acggtcgtttccccggagggacaggagatcaagattccgtccttcaactccatccacatg
atggccgattcgggtgcccggggttcggcccagcagattcgccagcttgccgggatgcgg
ggcctcatggccaagccgtcgggcgagatcatcgagacaccgattaccgcgaacttccgc
gaaggtctgaacgtactccagtacttcatttcgacgcacggcgcccggaaaggtctcgct
gatacggccctcaagaccgcaaactccggctacctcacccggcgactcgtggacgtggcg
caggatgccattatcaccgagaatgactgcggcacccttgacgggctcgttgtctccgcc
ctcaccgaggggggggagatcatcgagcacatcggcgaccgcattctcggccgggttgct
ctcgacgatatccttgatccggtcaccggcgaggtactcgtcgcagcaagccaggaaatt
gatgaaaacctcgtgaaaaaggtcgaggactcggggctcgagcgggtcaagatcaggtcg
gtgcttacctgccagagccggcgcggtatctgcgccaagtgctatggccgagacctggct
cgcggtcacctggtaaacctcggcgaggcggtcggcgtcattgccgcccagtcgatcggc
gagccgggtacgcagctcaccatgcgtaccttccacatcggtggtaccgcatcgcggcat
gccgagcagacctcgctggaagcccggacagagggacgcgtgaagttcatcaatatcaat
agcgtcatcaactcggaagggcaccacatcgtcatgaaccgtaacggtgaactggcggtg
gtcgacgagaccggccgtgagcgcgagaaatacgtcatcgtctatggtgccaagatcaag
gcgggtcccgatcaagtggtcaaaccgggcgaaacccttgccgagtgggacccctacacc
atccccatccttactgaggttacgggccggatcaagttcggcgacatcgtcgaaggcgta
accatggaggagcaacttgatgaagtcaccgggctttcccgcaaggtgatcatcgagtcc
cgcgatcctgacaagcggccgcgtatcacgatcaaggacgaggccggcaaaaccgtcaaa
atcagcgaaatcgccatgggacgttatttcctcccggtgggcgccaacatttcggtccaa
gaagactctttcgtcaatgccggtgacgttatcgccaagatcccgcgggaaaccaccaag
accaaggatattacaggcggtctgccccgcgttgccgagctcttcgaagctcgcaagccc
aaggactttgccgtcatttcggaaatcgacggtctcgtaactttcggcaaggatgccaag
ggcaagcggaaggttatcgttacccctgagatgggtgagcccaaggaatacctcatcccc
aaaggcaagcacataagtgttcatgagaacgactatgtgcgggccggtgaggccctgatg
gacggatcatccaacccccacgacattctgagggtgctcgggctcaaggaactcgcgcgt
tacctcgtcgacgaagtccaggaagtctaccggctccagggcgtcaagatcaacgacaag
cacattgaggtcatagtccgccagatgctgcgccgcgttcgcattaaagacgtgggtgac
acgagcttcctcatcgacgatcaactcgaacggtctgtgttcgaggaggaaaacgatcgc
gtcctcactaaaggagggcgaccggccattgcggagccgttgctgctcggcatcaccaag
gcgtctctctcgacagaatcgttcatttcggcggcttccttccaggagacgacaaaagtg
ttgacacaggctgccattgaaggtaaagtcgacagccttcgtggtcttaaggaaaatgtt
attatggggcggcttatccctgctgggacggggctttcccgctaccgcaacctcaaactt
gttgccgagcaggccgccgttgaagagtttgagttggtcgagcctgtgcggccccgggac
gactttgatgtcgacatggaggatgatgtcgactcgtttgacgagtag
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integrated database retrieval system
