Candidatus Gullanella endobia: FVIR_GE00022
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Entry
FVIR_GE00022 CDS
T04502
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ged
Candidatus Gullanella endobia
Pathway
ged03420
Nucleotide excision repair
ged03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ged00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FVIR_GE00022 (uvrD)
03430 Mismatch repair
FVIR_GE00022 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ged03400
]
FVIR_GE00022 (uvrD)
Enzymes [BR:
ged01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FVIR_GE00022 (uvrD)
DNA repair and recombination proteins [BR:
ged03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FVIR_GE00022 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
FVIR_GE00022 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_22
Viral_helicase1
T2SSE
DEAD
Motif
Other DBs
NCBI-ProteinID:
CUX95727
UniProt:
A0A143WQA1
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All DBs
Position
I:33908..36076
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AA seq
722 aa
AA seq
DB search
MDASNFLNKLNDRQREAVEAPRGNLLVLAGAGSGKTRVLVYRIAWLLAVENCSPYSVMAV
TFTNKAATEMRHRIENLVDTSQVGMWIGTFHGLAYRLLRAHYQDVFLPQDFQILDNEDQL
RLLKRLIRTMNLDEKQWSPHQAIFYINNKKDQGLRPQYIETFGNPIEKNWQHIYQVYQET
CDRAGLVDFSELLLRAYELWLNKPYILQQYRERFANILVDEFQDTNQIQYAWIRMLTGNH
GNLMIVGDDDQSIYGWRGAKVENIKRFLKDFPDAHRIRLEQNYRSSKNILQAANALIANN
GGRLGKNLWTKSAKGEKITLYCASNELDEARFVANRIKKNHKIGIALKDCAILYRSNAQS
RVLEEVLIQMKLPYQIYSGTRFFERQEIKDTLAYLRLIANNNDDAAYERIINTPVRGLGD
RTLDLVRQIAKDRKLTLWQSSLILIEEHILTNRAETALKSFLWLINSLTKEIAELPLHVQ
TDRVIKNSGLWNMYKQEIGEKGQIRIENLKELIIATRQFNYNNNEDHDFLPLQAFLSYAT
LEASEGKTDSYQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGRRLEEERRLA
YVGITRAMNKLTITYSETRRLYGKKEAYHLPSRFVSELPLSCLEEVRLRSCIARPVRQKP
ISTFLGESNSCFSLGQRVRHPKFGEGTVINLEGSGEHSRLKIFFQREGVKWLVTAYARLE
IV
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggacgcttctaactttctcaataaactaaacgacaggcaacgagaagctgtagaggca
ccgcgtggcaatttattagtactagctggcgcaggaagcggaaaaacacgagtattagta
taccgaattgcttggcttcttgcagtagaaaattgctcgccttattcagtaatggcggta
acttttactaataaagcggcaacagagatgcgacaccgtatcgaaaatctagtagatact
agtcaggttggtatgtggatcggaaccttccatggacttgcctatcgcttgcttcgtgct
cattatcaagatgttttcttaccacaagattttcagatcctcgataacgaggatcaatta
cgcttgttaaaacgccttattcgaactatgaatcttgatgaaaagcagtggtcaccacac
caagcgatattttacattaataataaaaaagatcaaggtttacgtccgcaatatatagaa
actttcggtaatccgattgaaaaaaattggcaacatatctatcaagtttatcaggaaact
tgcgatcgtgcagggctagtagatttttctgaacttcttctacgtgcctacgagctttgg
cttaacaagccgtatattttacaacaataccgagaacgttttgccaatatccttgtagat
gaatttcaagataccaatcaaattcaatatgcctggatccgtatgttaactggtaatcac
ggcaacctgatgattgttggtgatgatgaccagtcgatttatggctggcgcggagcgaag
gtagaaaatattaaacgttttctaaaggattttcctgatgcacaccgtattcgactagag
caaaactatcgttcaagcaaaaatattttgcaagcagctaatgctcttatcgctaataat
ggcggtcgtcttggtaaaaatctttggacaaagagtgctaaaggtgaaaaaattaccctt
tactgtgcttctaacgaattagatgaggcaagattcgtagcaaatcgtataaagaaaaat
cataagataggtatagctcttaaagactgcgctattttgtatcgtagtaacgctcagtct
cgtgtcttagaagaagtgctaatacaaatgaagttaccttatcagatttatagcggcact
cgtttttttgaacgtcaggaaattaaagatacgttagcctatttacgtcttattgctaac
aataatgatgacgctgcttatgaacggatcatcaatacgccagtgcgtggtcttggtgat
cgaaccttagatctcgttcgtcagatagcaaaagaccggaaattaacgttatggcagtct
agtcttattctaattgaagaacacatattaaccaatcgtgctgaaactgcactaaagtcg
tttttgtggttaattaattcgctaacaaaagaaatagcagagttgccattacacgtgcaa
accgatcgagtaatcaaaaactcaggtctttggaatatgtataagcaagaaataggtgaa
aaaggccagatacgtatcgagaacttaaaagaacttattattgctactcgccaatttaac
tataataataatgaagatcatgattttttaccattacaagcatttctatcttacgctact
ctagaagctagtgagggtaaaactgactcttaccaagacgcagtacaattaatgacgctg
cattctgctaaaggtctagaattccctcaagtattcattgtcggtatggaagaaggcatg
tttcctagccaaatgtcattagatgaaggtagacgtttagaagaagagcgacgtttagcg
tatgttggtattactcgcgcaatgaacaagctaacaattacttattcagagactcgacgg
ttatatggaaaaaaagaagcttatcacctaccgtctcgttttgttagcgaattgccttta
tcgtgcttagaagaagtacgactacgttcctgcatagctcgtccggtcagacaaaaacct
attagtactttcttaggtgaaagtaatagttgtttttctcttggtcaaagggtacgtcat
ccgaaatttggtgaaggtacagttattaatttggaaggcagtggcgaacatagtcgtctg
aaaatcttttttcaaagagaaggtgtaaaatggttggttacagcttatgctcgcttagaa
atcgtttga
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