Candidatus Gullanella endobia: FVIR_GE00047
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Entry
FVIR_GE00047 CDS
T04502
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ged
Candidatus Gullanella endobia
Pathway
ged03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ged00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FVIR_GE00047 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ged03021
]
FVIR_GE00047 (rpoC)
03400 DNA repair and recombination proteins [BR:
ged03400
]
FVIR_GE00047 (rpoC)
Enzymes [BR:
ged01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FVIR_GE00047 (rpoC)
Transcription machinery [BR:
ged03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FVIR_GE00047 (rpoC)
DNA repair and recombination proteins [BR:
ged03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FVIR_GE00047 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
LPD39
Motif
Other DBs
NCBI-ProteinID:
CUX95770
UniProt:
A0A143WPY9
LinkDB
All DBs
Position
I:68738..72958
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLMFLKSQTKTEEFNAIKISLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEAGMSNLEHHQILTEEQYLDALEEFGDEFDAKM
GAEAIQSLLKKIDIEQECNQLREELEEIHSETKRKKLTKRIKMLEAFQLSGNKPEWMILT
VLPILPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITSSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LHLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAIVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDRINSKGEGMVLTGPKEAEHVYHAG
IAELHARVKVRITEYNKRDNGEFIENTHLVDTTVGRAILWMIVPKGLPFLLVNQVLGKKT
ISKMLNTCYRVLGLKSTVIFADQIMYTGFSYAARSGSSVGIDDMVIPKEKAEIIDEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWTAANERVAKAMMDNFSKEAVINRNGEEECQISFN
SIFMMADSGARGSAAQIRQLAGMRGLMTKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTFSGIVMTPVIEGGDIKEPLRERVL
GRVIAEDVLKLGTGDVLIKRNTLLNEQWCDILEDNSIDSIKVRSVVTCDTDFGVCANCYG
RDLARGHLVNKGESIGVIAAQSIGEPGTQLTMRTFHIGGAAFRAAMESRIQVKNKGNIRL
SNAKFVMNGSGKLVITSRNTELKLVDEFGRTKESYKVPYGAIMDKGDSEKVMSGEIVAKW
DPHTMPVIAEVDGFVRFIDIIDAQTITRQTDELTGLSSIVVMDTAERTSGGKDLRPALRI
VDTNGNNVLLPGTDMPAQYFLPGKTIVQLEDGAKITSGDTLARLPQETSGTKDITSGLPR
VADLFEARRPKEPAILAEITGIISFGKETKGKRRLVISPLDGSDTYEEMIPKWRQLNVFE
GECVERGDIISDGPEPPNDILRLRGIHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIISSNSLEFLEGEQVEYSRIKLANRQLENDGKAKITYIRHLLGITKASLATESFV
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQERMHHYQNREPLT
ASKITADEASANLAELLNTGLDSNKN
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttacttatgtttctaaaatcgcaaactaaaactgaagagtttaatgcaata
aaaatttctctagcctcaccagacatgatccgttcttggtcgtttggtgaagtaaaaaag
ccggaaacaattaactatcgtacttttaaacccgagcgagatggtcttttttgcgcccgt
atttttggaccggtcaaagactatgaatgtctatgcggtaagtataaacgtttgaaacat
cgcggtgttatctgtgaaaaatgtggtgttgaagtaactcaaactaaggtaagacgtgaa
cgtatgggtcatatcgaattagcttcgcctactgctcatatctggtttttaaaatcgtta
ccgtctcgcattggtttattgttagatatgccactgcgtgatattgaacgcgtgctatat
tttgaatcttatgttgtagttgaagctggtatgagtaaccttgaacaccatcagatctta
accgaagaacagtatttagatgctctagaagaatttggtgatgaattcgatgctaagatg
ggtgctgaagcaattcaaagtctattaaaaaaaatagatatagaacaagaatgcaatcag
cttcgagaagagttagaagaaattcattctgaaactaagcgtaagaaattaacgaaacga
attaaaatgttagaagctttccaactatctggaaataaaccagaatggatgattttaact
gttttaccaatactaccaccagatttacgtccactagtaccactagaaggtggtcgtttt
gcgacatcagatctaaatgatttatatcgtcgggtaattaatcgtaataatcgcttaaag
cgtttgctagatctttctgcgccagatatcattgttcgtaacgaaaagcgtatgctacaa
gaagcagtcgatgcattattagataatggtcgtcgtggccgcgccattactagttctaat
aagcgtccattaaaatcgttagccgatatgattaaaggtaagcaaggacgatttcgtcag
aacttacttggaaaacgtgttgactattccggtcgttcagtaattactgttggtccgtat
ctgcatctgcatcagtgtggtctaccaaaaaaaatggcgctagaattatttaaacctttc
atttatggcaaattagaattacgtggtttagcaactactatcaaggcggctaaaaaaatg
gttgaacgtgaagaggccatagtatgggatatactcgatgaagttatccgagaacatcca
gttatgcttaatcgagcaccaacgttacaccgtcttggtatccaagcatttgaaccaata
ctaattgaaggtaaagctattcagctacatccattggtatgtgcggcatataatgctgac
ttcgatggtgaccagatggctgtccatgtgccactgacgttagaagctcaattggaagca
cgtgcactgatgatgtcaactaacaatatcttatcacctgccaatggtgaaccaattatt
gtgccatcccaggatgttgttctaggcttatattatatgacccgcgatcgtattaatagc
aaaggtgaagggatggtactaactggaccgaaagaagcagaacatgtttatcacgccgga
atagctgaacttcatgctcgcgttaaagtacgtatcactgagtataataaacgtgataat
ggcgagtttatagaaaatactcatctggtagacactactgttggtcgtgctatcctatgg
atgatagtcccgaaaggattaccgtttttgctagtaaaccaggtattaggaaaaaagacc
atatctaagatgctcaatacctgttatcgcgtattgggtttaaaatctaccgttatcttt
gctgaccagatcatgtataccggattttcctatgctgctcgctctggctcatctgtcggt
attgacgatatggtgattccgaaagagaaagccgaaatcattgatgaagctgaaactgaa
gttgctgaaatccaagaacagtttcagtcaggtctggttactgcaggtgaacgttataat
aaagttattgatatttggactgcagcaaatgaacgcgtcgctaaagcaatgatggataat
ttttccaaagaagctgtaattaatcgtaacggtgaggaagaatgtcagatctcgtttaat
agtatctttatgatggctgattctggtgcacgtggttcagcagcgcaaattcgtcagtta
gctggtatgcgtgggttaatgaccaaacctgatggctcaatcatcgaaacaccgattact
gcaaattttcgtgaaggtttaaatgtactccagtattttatttccacccacggcgcgcgt
aaaggtttagctgatactgcactgaaaacagctaattcaggttacctaacccgccgttta
gtcgacgtagcacaagatctagtggtaaccgaagatgattgcgggactttttctggtatt
gtaatgacaccggttatcgaggggggtgatattaaagagccgttacgcgaacgtgtttta
ggtcgcgttatagcggaagatgttctaaaactaggaactggagatgttcttataaaacgt
aatactcttctaaatgagcagtggtgtgatatattagaagataattccatcgacagcatt
aaggtacgttcagtcgttacttgtgatactgatttcggtgtatgtgctaattgctatggt
cgagatctagcgcgcgggcatctagtaaataaaggtgagagtattggtgttatcgctgct
caatctattggtgaacctggaacgcaattgaccatgcgtacatttcatatcggtggagct
gcatttcgtgctgcaatggaatctagaattcaagtaaaaaataaaggaaatatccgtctt
agcaatgctaagtttgtaatgaacggcagtggtaaattagtaattacttcacgtaatact
gagctaaaattagttgatgaattcggtcgtactaaagaaagctataaagtaccttatggt
gctataatggacaaaggtgatagcgaaaaagttatgagtggagaaattgttgctaaatgg
gatccgcatactatgccagttattgctgaagtcgatggttttgttcgttttattgatata
atcgatgctcaaactattacccgtcaaactgacgaactaactggtttatcttctattgta
gtaatggatactgccgagcgtactagtggtggtaaagatctgcgtccagcattacgtatt
gttgatactaatggtaataatgtgctgttaccaggaactgatatgccagctcaatatttt
cttccgggtaaaacaatcgtccaactagaagacggcgctaaaattactagcggtgatacg
ttagcacgtcttccacaggaaactagcggaactaaggatattaccagcggattacctcga
gttgcagatttatttgaagctcgtcgtccaaaagagccagcgattctagctgaaattact
ggtatcatttcttttggaaaagaaacaaaagggaaacgtcgcctagttatctcaccacta
gacggtagcgatacatatgaagaaatgattccaaaatggcgtcaacttaacgtatttgaa
ggtgaatgtgtagaacgtggtgatataatttctgatggtccagaaccgccgaatgatatt
ctacgtttgcgtggtatccatgcagtaacccgctatatcgtcaatgaagttcaagacgtt
tatcgtcttcagggagtgaagattaacgataaacatattgaagttatcgttcgtcagatg
ttacgtaaggcaacgattatcagcagcaatagtttagaatttctagaaggtgaacaggtg
gaatattcacgtattaagcttgctaatcggcaattagaaaatgatggcaaagcaaagatc
acttatattcgtcatctacttggtattactaaagcctcgctagctacagagtcgtttgtt
tctgcagcatcttttcaggaaactacacgtgtgctaactgaggctgcagtagccgggaaa
cgtgatgaactacgcggtctaaaagaaaatgtcatcgttggacggttaattccagctgga
actggttacgcttatcatcaggaacgtatgcaccattatcagaatagagaaccattaact
gcatcaaaaattacagctgatgaagcttctgctaacttagctgaattattaaacacaggt
ctagacagtaataaaaactaa
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