Candidatus Gullanella endobia: FVIR_GE00239
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Entry
FVIR_GE00239 CDS
T04502
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ged
Candidatus Gullanella endobia
Pathway
ged03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ged00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FVIR_GE00239 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ged03019
]
FVIR_GE00239 (deaD)
03009 Ribosome biogenesis [BR:
ged03009
]
FVIR_GE00239 (deaD)
Enzymes [BR:
ged01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FVIR_GE00239 (deaD)
Messenger RNA biogenesis [BR:
ged03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FVIR_GE00239 (deaD)
Ribosome biogenesis [BR:
ged03009
]
Prokaryotic type
rRNA helicases
FVIR_GE00239 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CUX96109
UniProt:
A0A143WTD6
LinkDB
All DBs
Position
I:complement(438628..440436)
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AA seq
602 aa
AA seq
DB search
MSKVETSFADLGLKAPILNALTDLGYKKPSPIQSACIPYLLSGYDVLGMAQTGSGKTAAF
FLPLLHNIKPELVVPQVLILVPTRELAIQVGEACTDFAKYIKDINIVTLYGGQRYDLQLR
ALRQGPQVVVGTPGRLLDHLKRGTLILASLSGLVLDEADEMLRMGFIEDVENIFTQIPKK
HQTALFSATMPEVIRRITRRFMNEPKEVCIHSSINTRPDISQSYWMVKGIHKNEALIRFL
ESEDFDAAIIFVRTKNMTLEVAEILERSGYNSSALNGDMNQALREKTLDRLRDGRLDVLI
ATDVAARGLDVDRISLVVNYDIPIDSESYIHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERIMKLTIPEVYLPTPEVLNTRRLAKFAANVKNQLESSDLDMYRALLTKLQPAEKLDMET
LAAVLLKIAQGERPLILFSDPVIKHHTHRNLHERNEQRENVERSLRRGIRDVRKMDLYRI
EIGRNDGVEVRHIVGAIANEGDIRSCYIGNIKLFSSHSTIELQQGISSKVLSHFTHIRIL
NKPMNIHFIGKAQLRDNSNTSRSNYSSKHRSFNNRREGDNKRRFRHEVQYLQYHNNTTAS
VS
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaagtagaaacctcttttgccgatcttgggctaaaagctcctattcttaatgca
ttaactgacctaggttataaaaaaccctctccaatccaatctgcttgtattccgtatctt
ttgtctggctatgatgtattagggatggcgcagaccggtagcggtaaaaccgcggctttt
tttctgccgctgttacacaatattaaacctgaactagttgtaccacaggtattaatttta
gtaccgacccgagaattagcgatacaagtaggtgaagcctgtaccgattttgctaagtat
ataaaagatattaacatagttactctttatggtggtcagcgttatgatttacaattacgt
gcgttgcgtcagggaccacaggttgtagttggcacacctggtcgtctacttgatcattta
aaacgaggtacgcttattttagctagtttaagcggattagtactagatgaagctgatgaa
atgttgcgaatgggttttatcgaagatgtcgaaaatatttttactcagataccaaagaag
catcaaactgcactattttctgccactatgccagaagttattcgccgtattactcgtcga
tttatgaatgaaccaaaggaagtatgtattcattccagtataaatactcgtcccgatatt
agccagagctactggatggttaagggtattcataaaaatgaagctttaatacgtttttta
gaatcagaagatttcgatgctgccattatttttgtgcgtactaaaaacatgactctggaa
gtagctgaaatacttgaacgtagcggttataatagctctgccttaaacggtgacatgaac
caagctcttcgtgagaaaacgttagaccgtcttagagatggtcgtcttgatgttctgatt
gctaccgatgtcgctgcccgtggactagatgttgatcgaatcagcttagtagtaaactac
gatattccaatagattctgaatcctatatacaccgtatcggtcgtaccggtcgtgctggc
cgcgctggccgcgcattgttgtttgtagaaaatcgagaacgccgtcttctgcgtaatatt
gagcgaataatgaagctaacaattccggaagtttacctaccaacgcctgaagttttgaat
acacgtcgtttagctaaatttgctgctaatgtgaaaaatcagttagaaagcagcgatctt
gatatgtatcgtgcactgctaactaaattacaaccagcagaaaagcttgatatggaaaca
ttagccgctgtgctattaaaaatagctcagggtgaacgtccgttgattttattttctgat
ccggtaattaagcatcacacacaccgaaatttgcatgaacgtaacgaacagcgagaaaac
gtagagcgctcacttcgtcgtggaattcgcgatgttagaaaaatggatctctatcgtatt
gaaataggccgtaatgatggagtagaagttcgtcatattgttggtgcaatcgctaatgaa
ggagatatcagaagttgttatattggtaatataaaattattttcctcacactctacaata
gaattacagcaaggtatatcgagtaaagtgttatctcatttcactcatatacgtattctg
aacaagcctatgaatatacattttatcggtaaagcacaattacgggataattcgaatact
agtcgtagcaattacagcagtaaacatcgcagcttcaataatcgtcgcgaaggcgataat
aaacgccgttttaggcatgaagtccaatatttacaatatcacaataacactactgcttca
gtaagctaa
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