Candidatus Gullanella endobia: FVIR_GE00455
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Entry
FVIR_GE00455 CDS
T04502
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ged
Candidatus Gullanella endobia
Pathway
ged03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ged00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FVIR_GE00455 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ged03021
]
FVIR_GE00455 (rho)
03019 Messenger RNA biogenesis [BR:
ged03019
]
FVIR_GE00455 (rho)
Transcription machinery [BR:
ged03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FVIR_GE00455 (rho)
Messenger RNA biogenesis [BR:
ged03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FVIR_GE00455 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
S1CSD-TOTE-2
OB_RNB
AAA_25
Motif
Other DBs
NCBI-ProteinID:
CUX96295
UniProt:
A0A143WRC5
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All DBs
Position
I:complement(803054..804313)
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AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELVILGENMGQENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDAISGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHANSRFRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTILLQNIAQSITCNHPDCILIVLLIDERPEEVTEMQRLVKGEVIASTFDEPAARHV
QVAEMVIEKAKRLVEHKKDVITLLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNMEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFEMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaaaaatacaccggtttcagagttagtaatcctcggcgaaaat
atgggacaggaaaatctagctcgcatgcgtaaacaagatatcatttttgctattcttaaa
cagcatgctaagagcggagaggatatattcggcgatggtgtactagaaattttacaagat
ggatttggttttctccgatctagtgacagttcatatcttgccggacccgatgatatctat
gtctctcctagccaaatacgtcgttttaatctacgtactggagatgctatttccggtaaa
attcgtccgccaaaagaaggagagcgttattttgctttgttaaaggttaatgaagttaac
tatgataaacccgaaaatgctcgtaataagattctatttgaaaacttaacaccgctacat
gccaattctcgttttcgtatggagcgtggtaatggttctacagaagacctaactgcacgt
gttctagatttagcctctcctatcggacgcggtcagcgtggacttatcgtagcaccacca
aaagctggtaagactattctactgcaaaatattgcgcaaagcattacttgcaaccaccca
gattgtatactaatagttctcttgattgatgagcgtccggaagaagtcaccgaaatgcag
cgcttagtgaaaggtgaagtaatcgcttctacttttgacgaaccagctgctcgccatgta
caagttgccgaaatggtaattgaaaaagctaaacgtttagttgagcataaaaaagacgtc
attactctgctagattctattactcgtctagcgcgtgcttataatactgttgttccagct
tctggaaaagtattgacaggtggcgttgatgctaatgctttacatcgtccaaagcgtttc
ttcggcgctgcacgcaatatggaagaaggtggtagtctaactattattgcgactgcactt
atcgatactggttctaagatggatgaagtaatttacgaagagtttaaaggaacgggtaat
atggaattacacttgtcacgtaaaattgctgaaaaacgagtttttccagcgatcgattac
aaccgttctggaacccgtaaagaagagttacttaccactcaagaagagctacaaaaaatg
tggattctgcgaaaaattattcatcctatgggtgaaatcgatgcaatggaatttctcata
aacaagttagcaatgacaaaaacaaacgatgaattttttgaaatgatgaaacgttcataa
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