Geminocystis sp. NIES-3708: GM3708_1107
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Entry
GM3708_1107 CDS
T04168
Name
(GenBank) cyanobacteria-specific RpoD-like sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
gee
Geminocystis sp. NIES-3708
Brite
KEGG Orthology (KO) [BR:
gee00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GM3708_1107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gee03021
]
GM3708_1107
Transcription machinery [BR:
gee03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GM3708_1107
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
BAQ60701
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All DBs
Position
1251101..1252192
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AA seq
363 aa
AA seq
DB search
MNQLSDQIDYHNDLIKAEIDEELNQVVAQFSISEESNLKKTRGNKPKLDDSVGAFFKEMA
RYPLLSAEEEIDLAYAVKFLSDCEEKQQELHRQLERTPGKIELAQAMGLENERQLDNRLY
KGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTY
AYWWIRQAITRTIANDSRTIRLPIHIVEKLNKLKKAQRVLKQNLQRHPTETELADEMGIN
SQGLHQLLQLRRQSLSLNHRVGKGEDTELMELLEDTNLLLPEEKMSEVMMHQEIVSVLSD
VLSEREKEVIVLRYGLASSKAHTLEEVGKIFELSRERVRQIQTKAMRKLRRPQVARRLKG
WLI
NT seq
1092 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaattaagcgatcaaatcgattatcataatgacttaatcaaagctgaaattgac
gaagaattaaatcaagtagttgctcaattttctatcagcgaggagagtaacctcaaaaaa
actagaggaaataagccaaaattagatgattctgtaggtgctttttttaaagaaatggca
cgttatccgctattaagtgcagaagaagaaattgatttagcttatgccgtaaaattttta
agtgactgtgaggaaaaacaacaagaattacatcgtcaattagaaagaactccgggtaaa
atagaattagctcaagctatggggctagaaaatgagcgtcaattagataatcgtttatat
aaaggtagagtagctaaacgaaaaatgattcgctccaatttacgtttagtagtatctatt
gccaaacgttatcttaatcgtggtgtaccatttttagatttaattcaagaaggtgcgatt
ggattaaatcgtgccgcagaaaaatttgatcccaataaaggttataaattctctacttat
gcttattggtggattcgacaagccatcactcgtactattgctaatgactctcgtactatt
cgccttccgattcacattgttgaaaaacttaataaactcaaaaaagctcaaagagtatta
aaacagaatcttcaacgtcatcccacagaaacagaattagctgacgaaatgggcatcaat
agccaaggtttacatcaattgttacagttaagaagacaatctctttctcttaatcaccga
gtgggtaaaggagaagatacagaattgatggaattactagaagatactaacttactttta
cctgaagaaaaaatgagtgaagtaatgatgcaccaagaaattgtatcagtactaagtgat
gttttgagtgaaagagaaaaagaagttattgttttgcgctatggtttagctagttctaaa
gctcatactttagaagaagttggcaaaatttttgaattatctagagaaagagttcgccag
attcaaactaaagcaatgcgtaagctcagaagaccacaagtagctagacgcttaaaaggt
tggcttatttaa
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