Geminocystis sp. NIES-3708: GM3708_1364
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Entry
GM3708_1364 CDS
T04168
Name
(GenBank) group 2 RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
gee
Geminocystis sp. NIES-3708
Brite
KEGG Orthology (KO) [BR:
gee00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GM3708_1364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gee03021
]
GM3708_1364
Transcription machinery [BR:
gee03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GM3708_1364
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
UPF0154
Motif
Other DBs
NCBI-ProteinID:
BAQ60958
LinkDB
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Position
complement(1529427..1530602)
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AA seq
391 aa
AA seq
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MTQAQEIFATISPANDFEEMLDFNSGNNRNSSIATIEGEFTDIIAEADSIGVSDLNGKKT
RKLPTTRRRTQTKKKPFTEDSIRIYLQEIGRIRLLRAEEEIELARQIADLLDLEYIRATL
IEHLGRIPTDQEWAIACDIPVLRQFNRRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLS
FQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETI
SRIKKTTKMLSQKMGRKPTEEEIAEDMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLG
DFIEADGETPEDEVSKNLLREDLENVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFN
VTRERIRQIEAKALRKLRHPNRNSILKEYIR
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggcacaagaaattttcgcaactatctcacccgctaatgatttcgaggaaatg
ttggactttaattctggtaataatcggaatagttctatagcaaccatagaaggtgaattt
accgatatcattgctgaagctgattctattggtgttagtgatctcaatggtaaaaaaact
cgtaaattaccgactacccgtcgtcgtacccaaacaaagaaaaaaccattcacagaagat
tctattcgtatttatcttcaggaaattggtcgaatcaggttacttcgtgcagaagaagaa
attgagttagcccgacaaattgctgatttattggatttagaatatatcagggcgacttta
attgaacatcttgggcgtattccgacagatcaagaatgggcgatcgcttgtgatattcct
gtcctgcgtcagtttaaccgccgcctacatattggcagacgtgcgaaagataagatggta
cagtctaacttgcgtttagtggtatccatcgctaaaaagtacatgaatcggggtttatca
ttccaagatttgattcaagaaggttctctgggtttaattcgtgccgccgaaaaattcgac
cacgaaaagggttataaattttccacttacgccacatggtggattcgtcaagctattact
cgtgcgatcgccgatcaatctcgaactattcgtcttcctgtgcatctttatgaaactatc
tctcgtatcaaaaaaaccactaagatgttatctcaaaaaatgggacgtaaacccacagaa
gaagagattgcagaagatatggagatgaccatcgaaaagttacgttttattgccaagtct
gctcaattacccatatccttagaaacccccatcggtaaagaagaagattctcgtttgggg
gattttattgaggccgatggggaaactcctgaagatgaagtatctaaaaatttattacga
gaagatttagaaaatgttttagattctcttagccctcgtgagcgtgatgttttacgatta
cgttatggcttggatgatgggcgaatgaaaaccttagaagaaattggtcaaatcttcaat
gttacccgtgaaagaattcgtcaaattgaggcgaaagcgttgcgcaaattgcgtcatcct
aatcggaatagtattttaaaagaatatattcgttaa
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