Geminocystis sp. NIES-3708: GM3708_1374
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Entry
GM3708_1374 CDS
T04168
Name
(GenBank) cyanobacterial SigF-related sigma factor
KO
K03090
RNA polymerase sigma-B factor
Organism
gee
Geminocystis sp. NIES-3708
Brite
KEGG Orthology (KO) [BR:
gee00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gee03021
]
GM3708_1374
Transcription machinery [BR:
gee03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GM3708_1374
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r4_2
Sigma70_r3
HTH_24
Sigma70_ECF
HTH_23
HTH_3
HTH_17
HTH_Crp_2
KORA
HTH_28
HTH_11
HTH_AsnC-type
HTH_8
GerE
HTH_30
DUF134
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-ProteinID:
BAQ60968
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All DBs
Position
1540268..1541041
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AA seq
257 aa
AA seq
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MSHKTASEYKIENEKLFILYQTNQDLKIRNQILELNLGLVRKEVCHWINQCQENYDDLLQ
VGCIGLIRAIERFNPEKGFAFSSFAIPYIKGEIQHYLRDKGDSIRIPRRCLELKHQSNRI
VINLRNKLNRQPTDREIAQELGVSLTEWHEVKLAHQNRDLISLDTTNNQEDDKNSLVDCL
PDNQYHSFQLVQEDKIRLNNALCQLEDSTRKVLEFVFLQDLTQKETAEKLGISVITVSRR
VKKGIAKMRGLVNPEEF
NT seq
774 nt
NT seq
+upstream
nt +downstream
nt
atgtcccataaaactgcttcagaatacaaaattgaaaacgaaaaactatttattctttat
caaacaaatcaagatctaaaaattcggaatcaaattttagagctaaacttaggcttagtt
agaaaagaagtctgtcattggataaatcagtgtcaagaaaattatgacgacttattgcaa
gtaggatgtatcggtttaattcgtgccattgaaagatttaatcccgaaaaaggttttgct
tttagctcctttgcgataccttatattaaaggagaaattcaacactatctcagagataaa
ggagattctattcgtattcctcgtcgttgcttagaattaaagcatcaatcaaatcgtatt
gttataaatttaagaaataaacttaaccgtcaacccactgacagagaaattgctcaagaa
ttaggggtatctttaacagaatggcatgaggtaaaattagctcatcaaaatagagatctt
atcagcctagatactaccaataatcaagaagatgataaaaatagtttggtggactgttta
cctgataatcaatatcatagttttcaattagtacaagaagataaaatccgattaaataac
gctttatgtcagttagaagatagcactcgtaaagtattagaattcgtttttttacaggat
ttaacccaaaaagaaaccgccgaaaaattgggcattagcgttattactgtttctcgacga
gtgaaaaaaggtattgctaaaatgagaggtttagttaaccccgaagaattttaa
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