KEGG   Geminocystis sp. NIES-3708: GM3708_209
Entry
GM3708_209        CDS       T04168                                 
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
gee  Geminocystis sp. NIES-3708
Pathway
gee03410  Base excision repair
gee03430  Mismatch repair
gee03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:gee00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    GM3708_209
   03430 Mismatch repair
    GM3708_209
   03440 Homologous recombination
    GM3708_209
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gee03400]
    GM3708_209
DNA repair and recombination proteins [BR:gee03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     GM3708_209
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     GM3708_209
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      GM3708_209
SSDB
Motif
Pfam: DHH RecJ_OB RPA_C DUF4423
Other DBs
NCBI-ProteinID: BAQ59803
UniProt: A0A0D6AAQ8
LinkDB
Position
253406..255718
AA seq 770 aa
MTKIDWKIYPSDDIPEWFHKEVNHLTSRNKSNYLTKLLWGRGIRDSQKLQWFLSTNNYSS
SSPFEFGREIKQALKRLENAWNRGEKVAIWGNYNIDGITATCVLWEGLKPFFPSENHLIY
YIPPGFHNSQGLTYQYIDFLQKQGINLIITADMGSDNIKEIKYAQNLGIDIIVIDHHTLP
NHRPEVISFLNPLNFAENHPFFALSGVGIAYKLLEALYQQFPSISSLSLTCLLDLVAIGL
LADTTPLKGDCRYLAREGIKILQQTQRSGLDFLVQLCQDNGDRPMNISQGIAQRINAINY
IHYDHNLAFQLLTTTDQELGRKLANLVEKAYFNVKNLQTKILFEIRKKINNLDISNGGLI
ILDNNQWEVNFLPLITHLISKEYNRPTILLFSDENQNIAKGYGCSINEINLVELLSNKQE
LFYSIIEYHDTIELSLPIENISLVRDSINQQLRSKINLDFFKPLINIDLVVTVSELGKNL
RHELRLIEPCSVDNPNPKLLIQNCCFKNLTNKNQSYKNERKEGEYIQTSFTIYDQSSPDK
GFNGIWLGHYSNEINPNSIYDIVVELDYNFLNKQYYIRIIDLKLSQKNINYLTTIKSAPL
IIDNRQEISKLDINDNSKIILDKCPVEWQEITSHYQNAVTNQKNLVLGYHYNNQKNSQEL
WYIFINIIKALIKENEAKNINILLEILDISELSLKNILDSLEKIGIVYENQENKLQFQQI
FTTFSSEVYQQVKQNFEDIIKQENLQKNYFYQIPISTIKDEVISNNLKHI
NT seq 2313 nt   +upstreamnt  +downstreamnt
atgactaaaattgattggaaaatttatccttctgatgatattccagaatggtttcataaa
gaagtaaatcatcttacaagcagaaataaatctaattatttaactaagttattatggggt
agaggaattcgtgattctcaaaaattgcaatggtttttaagtacgaataattattcctct
tcttccccttttgaatttggtagagaaataaaacaggctttaaaacgtttagaaaacgca
tggaatcgaggagaaaaagttgctatttggggaaattataatattgatggtataactgcc
acttgtgttttatgggaaggtttaaaaccctttttcccctcagaaaatcacctaatttac
tatattcctcctggttttcataactctcagggcttaacttatcaatatattgattttcta
caaaaacaggggattaatctcattattactgccgatatgggtagtgataatatcaaagaa
attaaatatgctcaaaatttaggaattgatataattgttattgatcatcatacgttacca
aatcatcgcccagaggtaatttcttttcttaatcccttaaattttgctgaaaatcatcct
ttctttgctctttcaggagttggtatcgcttataaattattagaagctttatatcaacaa
tttccttctatttcttcattatcccttacctgtttacttgatttagttgccattggttta
ttagctgataccactcctttaaaaggtgattgtcgttatttagcacgagaaggtattaag
attctacaacaaactcaacgatcaggtcttgattttctcgttcaattgtgtcaagataat
ggcgatcgccctatgaatatttctcaaggtattgcccaaagaattaatgctattaattat
attcattatgatcataatttggcttttcaattattaacaactacggatcaagaattagga
cgaaagttagcaaatttagttgagaaagcttattttaatgtgaaaaatttacaaacaaaa
attctttttgaaatacgtaaaaaaattaataatttagatatatctaatggtggtcttatt
attcttgataataatcaatgggaagtaaattttttgcctttaataactcatctcattagt
aaagaatataatcgcccaactattttattatttagtgatgaaaatcaaaatatagctaaa
ggttatggttgttctattaatgagataaacttggttgaattattaagtaataaacaagaa
ttattctatagtattattgaataccatgatactatagaattatctctacctatagaaaat
atctctttagttagagatagtattaatcaacaattaagaagtaaaattaatcttgatttt
ttcaaaccattaattaatattgatttagttgtcactgtttctgaattaggtaaaaattta
cgtcatgaattaagattaattgagccttgtagtgttgataatcctaatcctaaattatta
atacaaaattgttgttttaaaaatcttaccaataaaaatcaaagctataaaaatgaaaga
aaagaaggagaatatattcaaacatcttttactatttacgatcaaagttctccagataag
ggttttaatggtatttggttaggacattatagcaacgaaattaatcctaattctatatat
gatatagtggtggaattagattataattttttgaataaacaatactatattaggataatt
gatcttaaacttagtcaaaaaaatattaattatctcactactataaaatctgctccttta
attattgataatagacaagaaatatcaaaattagatattaatgataattctaaaattata
ttagataaatgtcctgttgaatggcaagaaataacctctcattatcaaaatgctgtcacg
aatcagaaaaatttggtcttaggttatcactataacaatcaaaaaaatagtcaagaatta
tggtatatatttattaatattatcaaggctttaattaaagaaaatgaagcaaaaaatatt
aatatattattagagatacttgatattagtgagttatcactaaaaaatattttagattct
ttagaaaaaattggcatagtttatgaaaatcaagaaaataagctccaatttcaacaaatt
tttaccactttttcctctgaagtttatcaacaagttaaacaaaattttgaagacatcatt
aagcaagaaaatttacaaaaaaattatttttatcaaatacctatttccacaatcaaagac
gaagttatttctaataacctaaaacacatttaa

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