Geminocystis sp. NIES-3708: GM3708_2439
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Entry
GM3708_2439 CDS
T04168
Name
(GenBank) DNA-directed RNA polymerase gamma subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gee
Geminocystis sp. NIES-3708
Pathway
gee03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gee00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GM3708_2439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gee03021
]
GM3708_2439
03400 DNA repair and recombination proteins [BR:
gee03400
]
GM3708_2439
Enzymes [BR:
gee01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GM3708_2439
Transcription machinery [BR:
gee03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GM3708_2439
DNA repair and recombination proteins [BR:
gee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GM3708_2439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
BAQ62033
UniProt:
A0A0D6AGW4
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All DBs
Position
2680964..2682853
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AA seq
629 aa
AA seq
DB search
MNHQQERQFDYVKIGIASPERIREWGQRTLPNGIVVGEVTTPETINYRTLKPEMDGLFCE
KIFGPSKDWECWCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVTHVWYLKG
IPSYLSILLDMPLRDVEQVVYFNSHVVLDPGNATNLSYRQLLSEDQWMEIEEQIYAEDSE
LEGIEVGIGAEAVERLLQEIKLEEEAEKLREEIINSKGQKRAKLIKRLRLIDNFIATGSK
PEWMVLSVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLNRLQEILAPEIIIR
NEKRMLQEAVDALIDNGRRGRTVVGGNSRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRS
VIVVGPNLQIYQCGLPREMAIELFQPFVINRLIRLGIVNNIKAAKKMIQKTDPSIWKVLE
EVIAGHPVLLNRAPTLHRLGIQAFEPVLVEGRAIQLHPLVCPPFNADFDGDQMAVHVPLS
IEAQSEARLLMMACHNILSPATGKPIIAPSQDMVLGCYYLTAENPAATKGADSYYANLDD
ALRAYEQKLVDLHAYIWVRFDGEVQTGKGDNELEKEETLADGSVWKYYQGRKVRETAEGE
IIAQYVHTTPGRIIYNKTIIDALDFDLVH
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatcaacaagagagacagttcgactacgtaaaaattggtattgcatctcctgag
agaattcgggaatggggacaaagaacactacctaatggcattgtggtaggagaagtcaca
actccagaaaccattaactatcgtaccctaaaaccagaaatggacgggttattctgtgag
aaaatttttggtccttctaaagattgggaatgttggtgcggaaaatataaaagagtacgc
catagaggtattgtctgtgaacgttgcggtgttgaagtcacagaatccagagttcgccgt
catcggatgggttatattaaattagccgctcctgtaactcatgtttggtacttaaaaggt
attcctagctatttgagtattctgttagatatgcctttgcgagatgtagaacaggtggta
tattttaactctcatgtagttctagatccgggtaacgctactaatttgagctatcgtcaa
ttactatctgaagatcaatggatggaaattgaagaacaaatttatgcggaagattctgag
ttagaaggcatcgaggttggtattggtgcagaagctgttgagcgtcttttacaagaaata
aaacttgaagaagaagcagaaaaattaagagaagaaattattaatagtaaaggacaaaaa
agagcaaaattaattaaaagattacggttaattgataattttattgcgacaggttctaaa
cctgaatggatggttttaagtgtaattcctgtcattcctcctgatttgcgtccgatggtg
cagttagatggtggacgttttgctacttctgatcttaatgatttataccgtcgtgtaatt
aatcgtaataatcgcttaaatcgtttacaagaaattcttgctcctgaaattattatccgt
aacgaaaagcggatgttacaggaagcggtggacgctttaattgataacggcagacgtggt
cgtactgtagttggtggaaatagtcgtcctttaaaatctttatcagatattattgaaggt
aaacaaggacgtttccgtcaaaacttattaggtaaaagggttgattattctggacgttca
gtaattgtagttggtcctaatttacagatatatcaatgcggtttaccccgtgaaatggct
atcgaacttttccaaccttttgttattaatcgtttaatccgcttaggcatcgttaataat
atcaaagcggcgaagaaaatgattcaaaaaacagatcctagtatctggaaagtattagaa
gaagttatcgctggacatcctgtattgttaaaccgtgcccctaccttacaccgtcttggt
attcaggcttttgaacctgtattagtagaggggagagcgattcaattacatcctttagta
tgtcctcctttcaacgctgactttgacggggatcaaatggctgtacacgttcctctttcc
atcgaagcacaatctgaagctcgattattgatgatggcttgtcataatattctttctcct
gcaacgggtaaaccaattattgcaccatctcaagacatggttttaggttgttattacctc
actgcggagaatcctgcggcaacaaaaggagcggatagttattatgccaatcttgatgat
gctttacgtgcttatgaacaaaaactcgtggatttacacgcttatatctgggtacgtttt
gatggtgaagtacaaacaggtaaaggggataatgaactcgaaaaagaggaaactttagct
gatggtagtgtttggaaatattatcaagggcgtaaagtgcgtgaaactgcggagggtgaa
ataattgctcagtatgtacacactactcctggacgtattatttataataaaaccattatc
gatgctttagattttgatttagtgcattaa
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