Geminocystis sp. NIES-3708: GM3708_2888
Help
Entry
GM3708_2888 CDS
T04168
Name
(GenBank) RNA-2',3'-PO4:RNA-5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gee
Geminocystis sp. NIES-3708
Brite
KEGG Orthology (KO) [BR:
gee00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gee03016
]
GM3708_2888
Enzymes [BR:
gee01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GM3708_2888
Transfer RNA biogenesis [BR:
gee03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GM3708_2888
Prokaryotic type
tRNA splicing ligases
GM3708_2888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BAQ62482
LinkDB
All DBs
Position
3171565..3172746
Genome browser
AA seq
393 aa
AA seq
DB search
MPYEQLNLSTPKPVLSWANHDLGFEETNMAKNVASLPFVYKHVALMPDVHLGKGALVGSV
IATKDAIIPAAVGVDVGCGMYALQTSFNASELEGKLKKIRLDIEANIPVGFNENKDVERK
VTNWQGWQGFKDLHSGVQRLEGKAIKQLGSLGGGNHFIELCLDTEDQVWLMLHSGSRHIG
NQLADCHIKTGKQLAKLANLRLPDPDLAYFIAGTPEFDAYWRDLQWAQGYARFNRDVMMS
RFKAIVEKHLNGGKATKPLLIVNCHHNYAEKETHFGEDVYVTRKGAVRATENDYGIIPGS
MGAKSFIVKGKGNHDSFCSCSHGAGRKMSRSQAKKRFDVHDLVMQTEGIECRKDSGIIDE
IPSAYKSIEEVMNQQTDLVEVVATLKQVICVKG
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgccttacgaacaattaaacctttccactcctaagcctgtgttatcttgggcaaatcat
gacttaggttttgaagaaactaacatggcaaaaaatgttgcttccttaccttttgtctat
aaacacgttgcccttatgcctgacgtacatttaggaaaaggagcgttagtaggttcggtt
attgcgacaaaagatgcaataatccccgcagctgtcggggttgacgtgggctgtggtatg
tatgcattgcagacaagctttaatgcttccgaattagaaggaaagttgaaaaaaattcgc
ttagacattgaagcaaatatccctgttggttttaacgaaaataaagacgtagaaagaaaa
gtaactaactggcaaggttggcaaggtttcaaagatttacattcgggagttcaaaggcta
gaaggtaaagccataaaacaactgggctcattgggcggtggaaatcacttcattgaatta
tgtttagatactgaagatcaagtgtggttaatgttacattcaggctctcgccatatcggt
aatcaattagcggattgtcacatcaaaacagggaaacaattagcgaaattagccaattta
aggcttcctgatcctgatttagcttattttattgctggtacccctgaatttgatgcttat
tggcgagatttacaatgggcgcaaggttatgcacgttttaaccgtgacgtgatgatgagt
cgttttaaagccattgtggagaaacatttaaacggtggtaaagccactaaaccattatta
atcgtcaattgtcaccataactacgctgaaaaagaaactcacttcggcgaggatgtctat
gtcactcgtaaaggggcagtaagagctacggaaaatgattatggtatcatacccggttca
atgggggcaaaatcttttattgttaaaggtaaaggtaatcatgatagtttttgctcctgt
agtcatggtgctggacgtaaaatgtctcggagtcaagctaagaagcgttttgatgttcat
gatttagtcatgcaaaccgaaggtattgagtgtcggaaagattcaggaattattgatgaa
attcctagtgcttataaatccattgaagaagtcatgaatcaacaaacggatttagtagaa
gttgtagcaactctcaagcaagttatttgtgtgaaaggataa
DBGET
integrated database retrieval system
