Geminocystis sp. NIES-3708: GM3708_3287
Help
Entry
GM3708_3287 CDS
T04168
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gee
Geminocystis sp. NIES-3708
Pathway
gee03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gee00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GM3708_3287
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gee03019
]
GM3708_3287
03009 Ribosome biogenesis [BR:
gee03009
]
GM3708_3287
Enzymes [BR:
gee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GM3708_3287
Messenger RNA biogenesis [BR:
gee03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GM3708_3287
Ribosome biogenesis [BR:
gee03009
]
Prokaryotic type
rRNA helicases
GM3708_3287
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
CLU_N
AAA_19
HEM4
Flavi_DEAD
Fe-ADH
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
BAQ62881
UniProt:
A0A0D6AJ84
LinkDB
All DBs
Position
3634919..3636403
Genome browser
AA seq
494 aa
AA seq
DB search
MTTSFASLGLSESLVTQVENLGFSTPTKIQTLAIPELILGRDVVGQSQTGTGKTAAYSLP
ILDRIDRHAKEVQALILAPTRELAQQVAESLKDLIGKERIYVLTVYGGQSMERQIRFLEK
GAHIVVGTPGRIIDLLHRKHLKLDHLKYVVLDEADEMLSMGFIDDVKQILSTTPATRQTT
CFSATMPREIKQLVNEFMSDPVSIMGEKPQDTPSRIDQVVYMVPRGWSKIKAIQPILEIE
DPQTAIIFVRTKRTASEVTAKLQEAGQSVDEYHGDLSQQQRERLIQRWREGKVKVVVATD
IAARGLDVSDLTHVFNFDLPDNSETYIHRIGRTGRAGKEGKAIALVEPSDRRLLRQIERR
VNQTIRIEQIPNRSTVEAKRMEKLTEKIKESLAGERLASFLPLIKELHGEYEPSAIAAAT
LQILYDANCPAWLQQDWEIPPESSLKPNISGKGKPSSGRKYGSRGSGSYERKQAFGGGGS
AKPKRNYDRPVKVR
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgacaacttctttcgcaagtttaggactatcagaatccctcgttactcaagtagaaaat
ttaggtttttctacccccacaaaaatacaaactttagctattcctgaattgattttagga
cgtgatgtagtgggacaatcccaaacgggtactggtaaaactgcagcctattctttgcct
attttagatcgtatcgatcgtcatgctaaagaggttcaagccttaattttagctcccacc
agagaattagctcaacaagtagctgagtctcttaaagatttaattggtaaagaacgtatt
tatgtactaaccgtttatggtgggcaatcaatggagcgtcaaattcgctttttagaaaaa
ggtgctcatattgttgttggtactccgggacgtataatcgatttattacatcgcaaacac
ttaaaattagatcatttaaaatacgtagtacttgatgaagctgatgaaatgttaagcatg
ggcttcattgatgatgtaaaacaaattctatcaactactcctgctactcgtcaaactact
tgtttctcagcgacaatgcctcgtgagattaagcaattagttaatgaatttatgagtgat
cctgtcagtatcatgggagaaaaaccccaagatactccttctcgtattgaccaagtagtt
tatatggtacctcgtggttggtcaaagattaaggcaattcaacctattttagaaattgaa
gatcctcaaacggcaattatttttgtacgaaccaaacgtactgcttctgaagtgaccgct
aagttgcaagaagcaggtcaaagtgtggacgagtatcatggtgacttaagtcaacaacaa
cgggagcgtttaattcaacgttggcgtgaaggtaaagtaaaagtagtagtggctactgac
attgccgctcgtggcttggatgtttcagatttaacccacgttttcaacttcgatttacct
gataatagtgagacttatattcaccgtattgggcgtactggaagagctggaaaagaaggt
aaagccattgctttagttgaacctagcgatcgccgtttgttacgtcaaattgaacgtcgt
gtaaatcaaactatcagaatcgaacaaattcctaatcgttcgacggtggaagccaaacgc
atggaaaaactcactgaaaaaattaaagaatctctagcaggtgaaagattagcttctttc
ttacctctgattaaagaattacacggtgaatatgagcctagtgctatcgctgcggcaact
ttacaaattttatatgatgccaattgccccgcatggttacaacaggattgggaaataccc
ccagaatcttctttgaaaccaaatattagtggtaaaggtaagccttcttctggacgtaaa
tacggtagtcgtggtagtggtagttatgagcgtaaacaagcctttggaggcggtggtagt
gccaaacccaaacgtaattatgatcgccctgtcaaagtcagataa
DBGET
integrated database retrieval system
