Geminocystis sp. NIES-3708: GM3708_3318
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Entry
GM3708_3318 CDS
T04168
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gee
Geminocystis sp. NIES-3708
Pathway
gee03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GM3708_3318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gee03400
]
GM3708_3318
Enzymes [BR:
gee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GM3708_3318
DNA repair and recombination proteins [BR:
gee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GM3708_3318
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_16
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
BAQ62912
UniProt:
A0A0D6AJD7
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All DBs
Position
3672400..3675972
Genome browser
AA seq
1190 aa
AA seq
DB search
MLNSVIRSIAKSPLTTELIHKLNTSKTLQLEGVTRLPKGLVTSAIIQEEKKNLLVICATI
EEASRWMANIEVMGWKQVFFYPTSEATPYESLNSESEMIWGQMQTLSNLINQDVTHLPLA
VVTTEKALQPHLPPPSVFADYCLNLCKGMTLSNRNETKDLSPLLPKIDLTLARMGYERVN
LVEIEGQWSKRGDLIDIFPVSAELPVRLEFFGDELESIREFDPVSQRSLDKIDQLSLTPT
NWQHIISHNLSSIEIIKPYISTLELENLENGIYPEAMTRFLGLAFNGENSQVASILDYFP
ENTIVAIDEIEQCQAHSRIWVEQAEEKWQLINELMISKPPYQEGSKEVFNVEDMETIPKI
HRDFSKSLKLIKYPQIRLSEIALEIHDNEIPTINLSSRPLPISPHQFAKLAKILRGKKEA
YNSIDLSKYNKWLISAQPSRSVALLQEHDCPAQFIANPIDFGIIEKLHRQNISTALKYSG
QAELEGFILPTFRIAIVTDREFFGQHNLASPTYIRKRRQAASKQVDVNKLRPKDFIVHKY
HGVGQFLELEIYENREYLVIKYSDGLLRVPADSLELVSRYRHTGEAPPKLNKMSGREWEN
VKNKVKKSIKKLAVDLVKLYATRAELKGNCCPEDTPWQLELEDSFPYQPTPDQLKAIQDV
KRDLESDRPMDRLVCGDVGFGKTEVAIRAIFKAVTAANKQVVFIAPTTILSQQHYHTLVE
RFSPYPINIGLLNRFRTESERREIIQKLATGELDIVVGTQLVLSNKIKYKNLGLLVVDEE
QRFGVNQKEKIKAMKASIDVLTLSATPIPRTLYMSISGVREMSLITTPPPSRRPIKTHIL
PFNGEVIRTAIRNELDRGGQIFYVLPRIEGMEKVIEMLQSMIPSLRIAIAHGQMQQGELE
ATMLGFNNGDADLLVCTTIIESGLDIPRVNTIIVEDSQKFGLAQLYQLRGRVGRSGIQAH
AWLLYPNNETLSDVARKRLRALQEFSQLGSGYHLAMRDMEIRGVGSLLGAEQSGQMEAIG
FEMYTEMLKEAINEIQGQEIPQVEDTQIDLPLTALIPNRYISDLEQKMDAYRAIATVSSH
KEIKQIEADWRDRYGDIPEPTQQLLQVAELKQKAKSIGFSRIKPEGKQNIILETPMQEPA
WLLLNEKLPSHLRSRFVYGKNKVIVRGLGAMKASQQLDSLNSWFTYLVSE
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgctcaactctgtaattcgctcgatcgctaaatctcctctaacaacagaattaattcat
aaactcaataccagtaaaactcttcagttagaaggagtcacgagattacctaaaggttta
gttacttctgccattattcaagaagaaaagaagaatttacttgtaatctgtgcgaccatt
gaagaagcatctcgttggatggcaaatattgaagttatgggttggaaacaagtttttttc
tatccaacttctgaagcaactccttatgagtctttaaacagtgaatcagagatgatttgg
ggacagatgcagactctttcaaacctaatcaatcaagatgttacacatttacctttagcg
gttgtcaccacagaaaaagccttacaacctcatttacctcctccatctgtttttgcggac
tattgcttaaatttatgcaagggcatgactttgagtaatagaaacgagacaaaagactta
agcccattgttgccaaaaattgatctaactttagccaggatgggttatgagcgggttaat
ctcgtagaaatcgaaggacaatggagcaaacgaggggatttaatcgatattttccctgtt
tcggcagaattacccgtgagattagagttttttggagatgaattagaatctatcagagaa
tttgatcccgtttctcaacgaagtttagataaaattgatcagttaagtttaactcccaca
aattggcaacacataattagtcataatctatccagcatagaaattatcaaaccatatatt
tcgactttagagctagagaatttggaaaatggcatttatcctgaagccatgactcgcttt
ttaggattagcttttaatggtgaaaatagtcaagttgcctcgattttagactatttccct
gaaaatacgatagttgccatcgatgaaatagagcaatgtcaagctcatagtcgtatctgg
gtagaacaagcggaggaaaaatggcaattaataaatgaattaatgatttctaaaccccct
tatcaagagggtagtaaagaagttttcaatgttgaggatatggaaactattccgaaaatt
catcgagattttagtaagtctttaaagttgattaaatatcctcaaattcgtctttcagaa
atagcattagaaattcacgataacgaaatacctactattaatttatcttctcgcccttta
cctatttctcctcatcaatttgcaaaattagctaaaattttaagagggaaaaaagaagca
tataattctattgatttgagtaagtataataaatggttaatttctgctcaaccttctcgt
agtgttgcccttttacaggagcatgattgccccgctcaatttatcgctaatcctattgat
tttggtattattgaaaaactccatcgtcaaaatatttctaccgctttaaaatattcagga
caagcagaattagaaggatttattttacctacttttcgcatcgctattgttacagataga
gagttttttggacaacataatttagccagtcctacctatattagaaaacgtcgtcaggcg
gcatcaaaacaagtagatgtaaataaacttagacccaaagattttattgttcataaatat
catggagtaggacagtttttagagttagagatttatgaaaatagagaatatttagtaatt
aaatatagtgatggtttattaagagttcccgctgacagtttagagttagtttctcgctat
agacatacaggagaagccccccccaagttaaataaaatgtctggaagagagtgggaaaat
gtcaaaaataaagttaagaaatctattaaaaaattagcggttgatttagttaaattatat
gcaactagagcagaattaaaaggcaattgttgccctgaagatactccctggcaattagaa
ttagaagattcttttccttatcaaccaactcccgatcaattaaaggcaattcaagatgta
aaaagggatttagaaagtgatcgtcctatggatagattagtctgtggtgacgtgggcttt
ggtaaaactgaagtagcaattagggcaattttcaaagctgttactgcggctaataaacaa
gtagtttttattgctcctacaactattttatctcaacaacattatcatactctagtcgag
agattctccccttatcccattaatattggcttattaaatcgctttcgcactgagtctgaa
agaagagaaattatccaaaaattagcaacgggagaattagatattgttgttggcactcag
ttagttttaagtaataaaattaaatataaaaatttgggtttattagtagtggacgaagaa
caaagatttggggttaaccaaaaagaaaaaatcaaagccatgaaagcatctattgacgtt
ttaacccttagtgcaactcctattcctcgtactctttatatgtccatttctggagtaaga
gaaatgagtttaattactactcctcctcctagtcgtcgccctatcaaaactcatattttg
ccttttaatggggaggtaattcgtacggcaattcggaatgaacttgatcgaggtggacag
attttctatgttttaccacgtattgagggtatggaaaaagtaattgagatgcttcagtct
atgatacctagtttaagaatagccattgcccatggacaaatgcaacaaggtgaattagag
gcgacaatgttaggatttaataacggtgatgcagatttactagtatgcacaactattatt
gagtcaggattagatattccgagggttaacacaataattgtcgaagattcccaaaaattc
gggttagctcaactttatcagcttagaggaagagtaggacgttcgggcatacaggctcat
gcttggttattgtatcctaataacgaaactttatcagatgtggctcgaaaaagattacgg
gcattgcaggaattttcgcaactgggatcaggttatcatttagctatgcgtgatatggaa
attcggggggttggtagcttattaggtgcagagcaatcaggacaaatggaagctatcggc
tttgaaatgtacactgaaatgttgaaagaggcaatcaatgaaattcaagggcaagaaatt
ccccaagtagaagatactcaaattgatttacctctgacggcgttaattcctaatcgttat
atttctgatttagaacaaaaaatggatgcttaccgtgcgatcgcaactgtatctagtcat
aaagaaatcaagcaaattgaggcagattggcgagatagatatggagatattcccgaacca
acacaacaattattacaagtagcagagttaaaacagaaagcgaaatctatcggcttttca
cggataaaaccagaaggtaaacaaaatattattcttgaaacacccatgcaagaaccagca
tggttattattaaatgaaaaattaccctctcatttgcgtagtcgttttgtctatggcaaa
aataaggtgattgttaggggtttaggtgcaatgaaagccagtcaacaattagatagttta
aatagttggtttacttatttagtcagtgagtaa
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