Geminocystis sp. NIES-3708: GM3708_3478
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Entry
GM3708_3478 CDS
T04168
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
gee
Geminocystis sp. NIES-3708
Brite
KEGG Orthology (KO) [BR:
gee00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gee03016
]
GM3708_3478
Enzymes [BR:
gee01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GM3708_3478
Transfer RNA biogenesis [BR:
gee03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GM3708_3478
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
Staygreen
Motif
Other DBs
NCBI-ProteinID:
BAQ63072
UniProt:
A0A0D6AJT6
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Position
complement(3848121..3850121)
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AA seq
666 aa
AA seq
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MEKGTLVEFRVNNDRRLAVVEKPEGKKDWIAIDEKGNLHKIRPQKVDYQIEGQSFKYTEI
PKFKTEVEPYVDESNLEIAWELLVEDSTPVTPSELASLIFSEETPPVCYAAHILLSDDKM
YFKKKGDIYEPRPITQVEEIKHQIEIETQRKQEKEGFIHKIHQALKGEDIHWEETELVKL
NFIEKFALQPDNPPKQAQEILESLGRQKTGDSALQLLIDLKLWSKHENIFLRRSSYPNYF
TAQVSEVAHSILDQLYAGTIKDPNPRLDLTHQKVYTIDDESTEEIDDGLSVEQLDNGSLR
YWIHIADPTRLINPDDTLDLEARKRSTSLYLPTGMIPMFPPELATGPMSLVQGQICPALS
FAITLKDDGGVSDYEIHATLIKPTYRLTYHDVDEMLHLDIQAELQVKQLAEAAKKRAQWR
KDNGSVMISMPEAIIKVKNDEEVSIELLDPSFSRSLVAEMMILAGEVAGKYCQEHNIPVA
FRSQPQPELPPEEELILLPAGPVRSSALRRCMPKSGTGLSAARHASLGLETYTQVTSPIR
RYTDLLAHFQIKAHLRGDELPFHRDKMQEIIFEVMSTSSEAVLVERQTNRYWSLQYLQKH
SNEIWHGLVLRWLREDDNLALILLEDLGLEFPHRFDRVPKLGEQIKLQVHFCDPQRDEIR
FKEAIG
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
gtggaaaaaggtactttagttgaatttagagttaataatgatcgccgtttagctgtagtg
gaaaaaccagaaggaaaaaaagactggattgccatagatgaaaaaggaaatctccacaaa
atacgtcctcagaaagttgattatcaaattgaagggcaatctttcaaatataccgaaata
cctaagtttaaaacggaagttgagccttatgtagatgaatctaatttagaaattgcatgg
gaattattagttgaagattctactcctgtcacaccttctgaattagcttctctgattttt
tccgaagaaactcctcctgtttgttatgcggcacacattcttttatctgatgataagatg
tattttaagaaaaaaggagatatttatgaacctcgacctattactcaagttgaagaaatt
aaacatcaaatcgaaatagaaacccaaagaaaacaagaaaaagaaggatttattcataaa
attcatcaggctttaaagggcgaagatattcattgggaagagacagaattagttaaactt
aactttattgaaaaatttgccctacaacctgataaccccccaaaacaagcccaagaaatt
ttggaatctttgggaagacaaaaaacaggtgattcagctttgcaattactgatagactta
aaattatggagtaaacatgaaaatatatttttacgccgtagttcttaccctaattacttt
actgcccaggtgtctgaagtggctcattctattctcgatcaactttatgcaggtacgata
aaagatcctaatcctagactggatttaactcatcaaaaagtttatactattgacgatgaa
agtacagaagaaattgacgacggtttaagtgtagaacaattagataatggttcattacgt
tattggatacacatagcagatcctacccgtttaattaaccctgatgatactttagatctt
gaagcacgtaaacgcagtacaagtctatatttaccgacagggatgattcctatgtttccc
cccgaattagctacaggaccgatgagtttagttcaaggtcaaatttgccctgcattgagt
tttgctatcactcttaaggatgatggtggagtttcggactatgaaattcatgctactctt
attaaacctacttataggttgacttatcatgatgttgatgaaatgttgcatttagatata
caagctgaacttcaagtaaaacagttagcagaagctgccaaaaaaagagcccagtggcgc
aaagataatggatcggtgatgatttccatgcctgaagctattatcaaagtcaaaaatgac
gaagaagtcagtattgaattattagatccttctttttcccgttcgttagtggcagaaatg
atgatattagcaggagaagtagctggaaaatattgtcaagaacataatattcctgttgca
tttcgtagccaacctcaacctgaattacctccagaagaagaattaatacttttacctgca
ggacctgtaagatcaagtgctttacgtcgttgtatgcctaaaagtggcactggtttatct
gcggctcgtcatgctagtttaggattagaaacttatactcaagtaacctctcccattcgt
cgttatacagatttactagctcactttcaaattaaagcccatttaagaggtgatgaatta
ccttttcatagggataaaatgcaagaaattatttttgaggtaatgagtacttcttctgaa
gcggttttagtggaaagacaaacaaatcgttattggagtttgcaatatttacaaaaacat
agcaacgaaatttggcatggtttagtattgcgttggttacgggaagatgataatttagct
ttgattttattagaagatttaggtttagaatttcctcatcgttttgatcgtgttcctaaa
ttgggagaacaaattaagttacaagtacacttctgtgatcctcaacgggatgaaattcgt
tttaaagaagcaatagggtag
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