Geminocystis sp. NIES-3708: GM3708_876
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Entry
GM3708_876 CDS
T04168
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gee
Geminocystis sp. NIES-3708
Pathway
gee03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gee00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GM3708_876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gee03019
]
GM3708_876
Messenger RNA biogenesis [BR:
gee03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GM3708_876
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
BAQ60470
UniProt:
A0A0D6ACJ6
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Position
complement(974902..976767)
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AA seq
621 aa
AA seq
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MYKIQARKRKTTAAEKPIVTLPSRNNKPLLKVIPLGGLHEIGKNTCIYEYEDEIILVDAG
IGFPTDGMHGINVVLPDMTYLKENQHKIKAMVVTHGHEDHVGGIPYHLKQIDTPIIYGPR
LAMALLRDKLEESGLHERTIIKTVSPREIIKIGKHFKVEFIRNTHSIADSFTLAIHTPIG
VLIHTGDYKIDHTPVDGEYFDLHRLAQLGEEGILCLLGDSTNSEVPGFTPSERAVYPGLE
KVFTQAQGRLMVTTFSTSVHRVNMLLELAMEYNRKVGVVGRSMLNVIAHARNLGYIKVPD
NLFVPLRNLSGLPENEVLILCTGSQGEKFAAMTRISKGEHRQVKIRQGDTIIFSASPIPG
NTIAVVNTIDRLMMQGANVVYGKQAGVHVSGHGCQEDQKLMLALAKPKFFVPVHGEHRML
IQHSKTAQSVGIPPENIVIIQNGDTIELTTDSISKGNKVPSGIQLVDTAGVVHDNVMEER
QRLAEDGVITIAASIDNQGRLLSQPQINLRGVVCKIEISTLERLIIRTVDKTITDRLKSS
LLLNGHDEVNWTSIRIDVEANLERLIQRELNSEPLVIFILQVQESTEKPVITNDNANDSD
TEMEESDPKFTRRRRKTIVSV
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgtacaaaattcaagcaagaaaaagaaaaactactgccgccgaaaaacctatagtaacc
cttccatcaagaaataataaaccattgttaaaagttattcccctcggtggattacatgaa
attggtaaaaatacctgtatttatgaatatgaagacgaaattattttagtagatgcgggt
attggtttccctactgatggaatgcacggtattaatgttgttttacctgacatgacttat
ctgaaggaaaatcagcacaagattaaagctatggttgtaactcatggtcatgaagatcat
gtggggggtattccttatcacctaaaacaaattgatacacccatcatttacggtcctcga
ctagcgatggctcttttgcgtgataaacttgaagaatcaggattacatgagcgtaccatc
attaaaactgtttctcctcgtgaaatcattaaaataggtaaacactttaaagttgagttt
attcgtaatacccactccatcgccgatagtttcacccttgcaattcatacccctattggt
gttttaattcatacgggagattataaaattgatcatactcccgtagatggtgagtatttc
gatctccaccgtttagctcaattaggagaagaaggcatattatgtttactgggagattct
actaattctgaagtacccggctttacaccctcagaaagagcagtttatcccggattagag
aaagttttcacccaagcacaagggcgtttaatggtaacaactttttctacttcagtacat
cgggttaatatgctgctagagttagcaatggaatataatcgtaaagtaggggtagtagga
cgctccatgttgaacgttattgctcatgctcgtaacttaggatatatcaaagtacctgat
aatttatttgtacctttacgcaatttaagcggtttaccagaaaatgaagtattaattctt
tgcacaggctctcaaggggaaaaatttgctgccatgacaaggatttctaagggtgaacat
cgacaagtaaagattcgtcaaggtgatacaattatcttttctgccagtccgattccgggt
aacacgattgcagtcgttaatacgattgatcgtctcatgatgcaaggagcaaatgtagtt
tatggaaaacaagctggagttcacgtttcaggtcatggttgtcaagaagatcaaaaatta
atgttagctttagccaaacctaagttttttgtacctgtacacggtgaacatagaatgttg
atacaacactccaagactgctcaaagtgttggtattcccccagaaaatattgttattatt
caaaatggcgatactattgaattaacaacagatagtattagtaaaggaaataaagttcct
tcaggtattcaattagtagatacggcaggagttgttcatgataatgtcatggaagagcgt
caacggttagcggaagatggggtaattactattgccgctagtattgataatcaagggcgt
ttattaagccaaccacaaattaatttacgaggtgttgtttgtaaaatagaaatttctacc
ttggaacgcttaattattcgtactgtggataaaactattactgatcgtctaaaaagtagc
ttactattaaatggtcatgatgaggttaattggacaagtattcgtattgatgtggaggca
aatttagagcgattaattcaacgagaattaaatagtgaaccattagttatttttatccta
caagtgcaagaatcaacggaaaaacctgtaattactaatgataacgctaatgatagtgat
actgaaatggaagaatccgatcctaaatttactcgtcgtcgtcgtaaaactattgtttct
gtgtag
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