Geobacter sp. FeAm09: FO488_06965
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Entry
FO488_06965 CDS
T07988
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gef
Geobacter sp. FeAm09
Pathway
gef03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gef00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FO488_06965 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gef03021
]
FO488_06965 (rpoC)
03400 DNA repair and recombination proteins [BR:
gef03400
]
FO488_06965 (rpoC)
Enzymes [BR:
gef01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FO488_06965 (rpoC)
Transcription machinery [BR:
gef03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FO488_06965 (rpoC)
DNA repair and recombination proteins [BR:
gef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FO488_06965 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
QEM67918
UniProt:
A0A5C1MBG7
LinkDB
All DBs
Position
1479217..1483431
Genome browser
AA seq
1404 aa
AA seq
DB search
MEDYFSFFDKPKDPLHFSAIRISVSSPEKIRERSHGEVKKPETINYRTFKPERDGLFCAK
IFGPTKDYECNCGKYKRMKHRGIICEKCGVEVIPSKVRRERLGHIDLATPVAHIWFLKSL
PSRIGNLLDITLKDLEKVLYFEAFVISDPKNTPMQFCEVMSEEKYLKAQQEYGSDAFEGG
MGAEAIRNCLRSIDLDELAVSLRSEMMESTSEAKRKKTAKRLKVVEAFKSSGNKPEWMIL
ECIPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLCELQAPEVIIRNEKRML
QEAVDALFDNGRRGRAIAGPNKRPLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGP
ELRLHQCGLPKKMALELFKPFIYNKLEERGYVTTIKSAKKMVEKERPEVWDVLEEVIKEH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHLPLSIESQVE
ARVLMMSTNNILSPAHGKPIIVPSQDMVLGAYYMTRDRLYEPDPDESGRAKVDPATGKLM
YRKVKGTGKVFSSPDEVRIAFDAGEVDMQAKVRVRMKNFVDDEKPQLIDTTIGRVLMREI
LPPQVPFSTINKVLNKKELSNLVDTCYRLADSKETVILADRLKEMGFRYANLAGISICLD
DMVIPEGKAAIITKAEDEVKEIQNQYTEGLITDGERYNKVIDIWAKATEDIAKEMLDNLS
KESFIVDGEDIKESSFNAIHMMADSGARGSAQQIRQLAGMRGLMAKPSGEIIETPITANF
REGLTVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDAIITEDDCGTLDGLVVS
SLTEGGEIIEHIGDRILGRVALDDILDPVTGEVLVDANQEIDENLVKRIEDAGLEKVKIR
SVLTCQSRRGICAKCYGRDLARGHIVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGTASR
HAEQTSLEARTDGSLKFINVNSVVNNEGHHIVMNRNGEIAVTDETGREREKYTVVYGAKI
RIAPGGAVKQGDTLAEWDPYTMPILTEVAGKVKFGDIQEGVTIEEQLDEVTGLSRKVIIE
TKDTDKRPRIAIKDTAGDGSGTIGRYFLPVGANIYVQEDALVSAGDIIAKIPRETTKTKD
ITGGLPRVAELFEARKPKDFAVISEIDGRVTFGKDAKGKRKVVVTPEVGEPKEYLIPKGK
HISVHEGDHVRAGEALMDGSSNPHDILRVLGVKELAKYLVDEVQEVYRLQGVKINDKHIE
TIVRQMLRRVRIKEVGDTNLLVDDQVERWVFEDENEKVFADGKRPAIAEPLLLGITKASL
STESFISAASFQETTKVLTQAAIEGKVDYLRGLKENVIMGRLIPAGTGLARYRHLRLQAE
AQMQEAAHQEELVADLSDDEQEAA
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
gtggaagattatttcagttttttcgataaaccaaaagatccactccacttttcagctata
cggatatcggtttcgtcgcccgagaagattcgggaacgttcccacggcgaggtcaagaag
ccggaaacgatcaattaccgcaccttcaaaccggagcgggacggtctgttctgcgccaag
atcttcggtcccaccaaggactacgagtgcaactgcggcaagtacaagcgcatgaagcat
cgcggcatcatctgcgaaaagtgcggcgttgaggttatcccctccaaggtgcgccgggag
cggctgggacatatcgacctggccaccccggtggcccatatctggttcctcaagtcgctg
ccctcccgcatcggcaacctgctggacatcaccctcaaggaccttgagaaggtcctgtac
ttcgaggcgttcgtcatcagcgaccccaagaacacgccgatgcagttctgcgaggtcatg
tcggaggagaaatacctcaaggcccagcaggaatacggcagcgacgcctttgaagggggc
atgggggccgaagccatccgcaactgcctccgttccatcgacctggacgaactggcggtg
tcgctccgttccgagatgatggagtccaccagcgaggcgaagcgcaaaaagaccgccaag
cgcctcaaggtcgtggaagcgttcaagtcctcgggcaacaagccggagtggatgatcctg
gagtgcatcccggtcctgccgccggaactgcgccccctggtgccgctggatggcggccgc
ttcgccacctccgacctgaacgacctgtaccgccgggtcatcaaccgcaacaaccgcttg
aagcgcctctgcgaactgcaggcgcccgaggtgatcatccgcaacgagaagcggatgctc
caggaggcggttgacgcgctgttcgacaacggccgccgcggccgcgccatcgccggcccc
aacaagcgtcccctgaaatccctgtccgacatgctcaagggcaagtcgggccggttccgc
cagaacctcctgggcaagcgcgtcgactactccggccgttcggttatcgtcgtcggcccc
gagctgcggctgcaccagtgcggcctgccgaagaagatggccctggagctgttcaaaccc
ttcatctacaacaagctggaagagcgcggctacgtcaccaccatcaagagcgccaagaag
atggtggagaaggagcgccccgaggtgtgggacgtgctggaagaggtcatcaaggagcat
ccggtgatgctcaaccgcgccccgaccctgcaccgcctcggcatccaggcctttgaaccg
gtgctcatcgagggcaaggccattcagctgcacccgctggtttgtaccgccttcaacgcc
gacttcgacggtgaccagatggccgtgcacctcccgctctccatcgagagccaggtggag
gcccgcgtcctgatgatgtccaccaacaacatcctgtcgccggcccatggcaagccgatc
atcgtaccgtcccaggacatggttctcggcgcctactacatgacccgcgatcgcctgtac
gagccggacccggacgaaagcggccgcgccaaggtcgatccggccaccggcaagctgatg
taccgcaaggtcaagggcaccggcaaggtgttctcctcgcccgacgaggtgcgcatcgcc
ttcgatgccggcgaggtcgatatgcaggccaaggtccgcgtgcggatgaagaacttcgtg
gacgacgaaaaaccgcaattgatcgataccaccatcgggcgggtcctcatgcgggagatc
ctgccgccccaggtgccgttcagcacgatcaacaaggtgctcaacaagaaggaactgtcc
aacctggtggacacctgctaccgcctggccgacagcaaggaaaccgttatcctggccgac
cgcctcaaggagatgggcttccgctacgccaacctggccggcatctccatctgccttgac
gacatggtcatcccggaaggaaaggcggccatcatcaccaaggccgaggacgaggtcaag
gagatccagaaccagtacaccgagggtctcattaccgacggcgagcgctacaacaaggtc
atcgacatctgggcaaaggcgactgaagacatcgccaaggagatgctggacaacctctcc
aaggagagcttcatcgtggacggggaggatatcaaggagtcgtccttcaacgccatccac
atgatggccgattccggcgcccgtggttccgcccagcagatccgccagttggccggtatg
cgtggtttgatggccaagccttccggcgagatcatcgagacccccattaccgcaaacttc
cgcgaggggctgacggttctccagtacttcatctcgacccacggtgcccgtaaaggtctg
gccgatacggcgctgaaaaccgccaactccggttatctgacccgccgcctggtggacgtt
gcccaggatgccatcatcaccgaggacgattgcggcaccctggacggtctggtcgtgtcg
tccctgaccgaggggggcgagatcatcgagcatatcggcgaccgtatcctgggccgcgtg
gccctggacgacatcctcgacccggttacgggcgaggtgttggtggacgccaaccaggag
atcgacgaaaacctggtgaagcggatcgaggacgccggcctggagaaggtcaagatccgt
tccgtgctcacctgccagagccgccgcggcatctgcgccaagtgctacggccgcgacctg
gcccgcggccatatcgtcaacatgggcgaagcggtcggcgtcattgccgcccagtccatc
ggcgagccgggtacccagctgaccatgcgtaccttccacatcggcggtaccgcttcccgc
catgccgagcagacctccctggaggcccgcaccgatggttcgctcaagttcatcaacgtc
aacagcgttgtgaacaacgaagggcaccatatcgtcatgaaccgtaacggcgagatcgcc
gtcaccgacgaaaccggccgcgaacgcgagaaatacacggtcgtgtacggcgccaagatc
aggatcgccccgggcggagccgtcaaacagggcgacacgctggccgagtgggacccctac
accatgccgatcctcaccgaggtcgccggtaaggtcaagttcggcgacatccaggaaggc
gttaccatcgaggagcaactggacgaagtcaccggtctctcccgcaaggtcatcatcgag
accaaggatacggacaagcgtccgcgcatcgccatcaaggatactgccggcgacggcagc
gggaccatcggccgctacttcctgccggtgggcgccaacatctatgtccaggaagatgcc
ctggtcagcgccggcgacatcatcgccaagatcccccgcgagacgaccaagaccaaggat
atcaccggtggtctgccgcgcgtcgccgagctgttcgaggcgcgcaagcccaaggacttc
gcggttatctccgagatcgacgggcgggttaccttcggcaaggatgccaagggcaagcgc
aaggtcgtcgttactcccgaggtcggcgaaccgaaggaatacctgatccccaaaggcaag
cacatcagcgtccacgaaggggaccacgtgcgtgccggcgaggcgctcatggacggttct
tcgaacccccacgacatcctccgcgtactcggcgtcaaggaactggccaagtacctggtg
gacgaggtccaggaggtgtaccgtctccagggggtcaagatcaacgacaagcatatcgag
accatcgtgcgccagatgttgcggcgggtccgcatcaaagaggtcggcgataccaacctg
ctggtggatgatcaggtggaacgctgggtcttcgaggacgaaaacgagaaggtctttgcc
gacggcaagcgcccggccatcgccgaaccgctcttgttgggcatcaccaaggcttcgctc
tccaccgagtcgttcatctcggcggcttccttccaggagacgaccaaggtgctgacccag
gccgccatcgaagggaaggtcgattacctgcgcggcctgaaggaaaacgtcatcatgggc
cgcctcatccctgcgggaacgggattggcgcgctatcgccatctgcgtctgcaggccgaa
gcgcagatgcaggaggcggcacaccaggaagaactggtggctgacctgtcggacgacgaa
caagaagctgcataa
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integrated database retrieval system
