Geobacter sp. FeAm09: FO488_09315
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Entry
FO488_09315 CDS
T07988
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
gef
Geobacter sp. FeAm09
Pathway
gef03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gef00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FO488_09315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gef03019
]
FO488_09315
Enzymes [BR:
gef01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FO488_09315
Messenger RNA biogenesis [BR:
gef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FO488_09315
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Utp25_C
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
QEM68341
UniProt:
A0A5C1MDG7
LinkDB
All DBs
Position
1968207..1969598
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AA seq
463 aa
AA seq
DB search
MRFDELSIPEEVRQGIRDAGFSECTPIQEQTLPLSLSGKDVAGQAQTGTGKTAAFLITLF
TRLLENKGSTQQPRALILAPTRELVVQIEEDAQLLGRHCGLVTQAIYGGVDYMKQRSALR
EGADVVVGTPGRLIDYLKQKVYSLKGIEMLVIDEADRMFDMGFIADLRFILRRLPPYDKR
QNLMFSATLSLRVMELAYEFMNMPEKLSVTPEKMTAERVEQVLFHVSRKEKFPLLLGLLR
REGMERTMIFINTKREAEYLFDRLNANGFPCRVISGDVEQRKRMRILDDFKQGKLPILIA
TDVASRGLHIEGVSHVINYDLPQDCEDYVHRIGRTARAGSEGKAISLADEDGAFFLEAIE
EYIKDKIPTEWAEDELFVNDYVRTPRPKRKPELKADGGRTRSGDRTTRSRSGGRAKPKSA
AASAPVPAPESAAGETPTAKKRRRRRRKPGEKTEPGSTAPQGE
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgagatttgacgaactttcaatccctgaagaggtccggcaaggcatccgggacgctggt
ttcagcgaatgcaccccgattcaggagcaaaccctgcccctctccctgagcggcaaggac
gtggccggccaggcccagaccggcaccggcaagaccgccgcttttctgatcaccctgttt
acccgtctcctggagaacaaggggagtacgcagcagccgcgggcactgattctggcacca
acgcgggagttggtggtccagatcgaggaagatgcgcaactgctgggccgccactgcggt
ctggtcacccaggcgatttacggcggcgtcgactacatgaaacaacgcagcgccctgcgc
gagggggccgatgtggtggtcggcacccccggccggctgatcgattacctgaagcagaag
gtctattccctcaaggggatagagatgctggtgatcgatgaggcagaccgcatgttcgac
atgggctttatcgccgacctgcgtttcatcctgcggcgactccccccctacgacaagcgt
cagaacctgatgttttcggccaccctcagcctccgggtcatggagttggcctacgagttc
atgaacatgccggaaaagctctcggtcacgcctgaaaagatgaccgcggagcgggtggag
caggtgctgttccacgtttcccgcaaggaaaaattccccctcctgctggggttgctccgt
cgcgaagggatggagcgcaccatgattttcatcaataccaaacgcgaggccgaatacctg
ttcgaccgcctgaacgccaacgggtttccctgccgcgtcatctcgggcgatgtggagcag
cgcaaacgcatgcgcatcctcgacgatttcaagcagggcaagcttcccatcctgatcgca
accgacgtggcctcacgcggcctgcatatcgaaggggtttcccacgtcataaattacgac
ctgccccaggactgcgaggactacgtccatcgcatcggccgcaccgcacgggccggttcc
gaaggcaaggccatctccctggccgacgaggacggcgcctttttcctggaagccatcgag
gagtacatcaaggacaagatccccaccgagtgggcggaggacgaactgttcgtcaacgac
tacgtgcggacgccgcgccccaaacggaaaccggagctcaaagccgatggcggccggact
cggagcggcgaccggacgacccgttccaggagcggcggccgggcaaagccgaaatctgcg
gctgcctcagcccccgtccccgcacccgaaagcgcagccggcgaaacgccgaccgcaaag
aaacgccgccgcaggcgccgcaaaccgggcgagaaaacggaaccgggaagcaccgctccc
cagggggaatag
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