Geobacter sp. FeAm09: FO488_11885
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Entry
FO488_11885 CDS
T07988
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
gef
Geobacter sp. FeAm09
Pathway
gef03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
FO488_11885 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gef03400
]
FO488_11885 (recB)
Enzymes [BR:
gef01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
FO488_11885 (recB)
DNA repair and recombination proteins [BR:
gef03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FO488_11885 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_22
ResIII
AAA_11
Cupin_3
RHH_1
Motif
Other DBs
NCBI-ProteinID:
QEM68788
UniProt:
A0A5C1MDU3
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All DBs
Position
2553006..2556701
Genome browser
AA seq
1231 aa
AA seq
DB search
MKNLDLRAIDTCGPTLIEASAGTGKTWTITALYTLLLLEQRLRPEEILVVTYTKAATAEL
RDRIRKRIAATLDLYATGREPADELEQLLLDSPKVNREAAQLLLTRALYSFDDAAIFTIH
GFCQRALLENAFESGSLFDSELTADQSALAAQVCDDFWRTRIMADTGPFLERLVREGYTP
DKLAAPFEGQYQNPDLNVIPEAVDVDLARLAGQRDALLPPVAAMWAAERAAIVQILNQAN
LSQTSYKPAQIEAAAAKLDVCLGQGNLDKGSDGLALFTPARIEKGMKKGSARPEHLFFDL
CGRLHDAVVRVEDGFDTKLIHRRIELKAWLRDELARRKQALNLRCYDDLLLDLHLALEGP
GGARLAAGLRERYQAALIDEFQDTDPLQWRIFARLAGLPAGNGAMDRPERGTFGTATPEA
PPYPLFLIGDPKQAIYSFRGADIHAYLAAARATAADRRWTLDTNRRSTPPLVAAVNALFD
TGNPFLNPGIRFNPVQAGRQRHQHLLRHGRPVEQPLRFWVYQRADQSKPAAKGTARGTTV
TATAAEIARLLDGKSEIIPKDGIRRPLKPGDMAILVKAHYQADQMQSALAALGIPSVQHG
NATIFETREALDLLRILRAAADPGRSALIREALLTSVVGLSANDVFALQHDETAWEVWLF
RFRTLHEAAQTGGVIALVSRLLGECGVRRQALASADGPRRMTNILHCCELLHQAEQEQGR
GLEGSIAWLERRITGEMQDDTFLLRLETDANAVTISTIHASKGLEYPVVFLPFAWDPPSA
QNRRVLFHDASGKLTLDLGSDKRDTDHRQLAREEQDAEAARLLYVALTRAEFLCYVAWGG
IKGAFESPLRRLLHGEDYRDAKSFGAAPDQEILAALAGLAGKAAREGGPSPIAAGFMPAD
TPAPPYSPDRETSASFACRGVQRTIAAQWRVSSFSAITDGAERHLQPRDYDAVAAHDAPP
AMAEPPAGTDGPPAGFGTDLSIFGFPRGAAAGTCLHELFEQLDFSAVEGESLERLCQTVL
LRNGYDGRWLPAVQRMVMDIVAAPLLSDEPGFSLSRLKPGSWQVEMEFFLPVASLSGGRL
AELFAGLLSPDRHGGFGEILAALHVQETRGMLQGFMDMVFEHNGRFYIIDWKSNHLGGRP
GDYSATKLLEPMARHAYILQYHLYTLALDRLLRLRLPGYEYDTHFGGAIYVFLRGIVAGS
AEYGIYRDKPSPLFISRANELLLGSGEAGLA
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacctcgacctgcgcgcaatcgacacctgcggcccgaccctgatcgaggccagc
gccggtaccggcaagacctggaccatcaccgcgctctataccctgctgctcctggagcaa
cgcctgcgcccggaggagatcctggtggtaacctacaccaaggccgccaccgccgaactg
cgcgaccgcatcaggaaacggatcgccgccaccctggacctgtacgccaccggacgggag
ccggccgacgaattggaacagctgctgctggacagcccaaaggtgaaccgggaggccgcg
caactcctccttacccgcgccctgtactccttcgacgatgcggccatcttcaccatccac
ggcttctgccagcgggcgctgctggaaaacgccttcgagagcggttcgctgttcgacagc
gaactgaccgccgaccagtccgccctggcggcccaggtatgcgacgacttctggcggacc
cggatcatggccgacacggggccgttcctggaacgcctggtcagggagggatacacgccg
gacaagctggctgccccctttgaagggcagtatcagaacccggacctgaacgtcatcccc
gaggctgtagatgtggacctggcccggctcgcggggcagcgggacgccctgctgccgccg
gtggcggccatgtgggctgcggaacgcgcggccatcgtccagatcctcaaccaggccaac
ctgagccagaccagctacaaaccggcccagatcgaggcggccgcggcaaaactcgacgtc
tgcctgggacaggggaatctggacaagggaagtgacggcctggcgctgtttaccccggcc
cgcatcgaaaagggcatgaagaaagggtccgcccggccggagcacctctttttcgacctc
tgtggccgcttgcacgatgccgttgtccgggtcgaagacgggttcgacacgaaactgatc
catcgccggatcgagctcaaagcatggttgcgggacgaactggcccggcgcaagcaggcc
cttaacctgcgctgttacgacgacctgctgctggacctgcacctggccctggaggggccg
ggcggggcgcggctggccgccgggctccgcgagcgctaccaggcggccctgatcgacgag
ttccaggacaccgacccgctgcaatggcggatattcgcccgcctggccgggttgccggca
ggaaatggggcaatggaccggccggaacggggtactttcggcacggccaccccggaggcg
cctccgtacccgctcttcctcatcggcgaccccaaacaggccatctacagcttccggggc
gccgacatccatgcctacctcgccgctgcccgggccacggcagcggaccggcgctggacc
ctggacaccaaccgccgttccaccccgcccctggtggccgccgtcaatgccctgttcgac
acgggcaacccgttcctcaatcccggcatccggttcaatccggttcaggccggccggcag
cggcaccagcacctcctgcgccacggcaggccggtggagcagccattgcggttctgggta
taccaacgtgccgaccagtcaaagccggcggccaaagggacggcacgcgggacgacggtc
acggcgaccgccgcggaaatcgcccgcctgctggacggcaagagcgagatcatccccaag
gacggcatccggcggccgctcaagccgggtgatatggccatcctggtcaaggcccattac
caggccgaccagatgcagagcgccctggccgccctgggcatcccctcggtccagcacggc
aatgccaccatcttcgagacccgcgaagcgctcgacctgctgcgcatcctccgggccgcc
gccgatccgggccgcagcgccctgatacgcgaggcgctgctcacctccgtcgtcggcctg
tcggccaacgacgtctttgccctgcagcacgacgagaccgcctgggaggtctggctgttc
cgcttccggacgctgcacgaggcggcccagacaggaggggtgatcgccctggtttcgcgc
ctgctgggggagtgcggcgtcaggcggcaggcgctggcctctgccgacggcccccggcgc
atgaccaacatcctgcactgctgcgaactgctgcaccaggcggagcaggagcaggggcgc
ggcctggagggctccatcgcctggctggaacggcgcatcacgggagagatgcaggacgac
acctttctcctgcgcctggaaacggacgccaacgccgtcaccatttccaccatccatgcc
agcaagggcctggaatatccggtggtgttcctcccctttgcctgggaccccccttccgcc
caaaacaggcgggtgctcttccacgatgcctccggaaagctgaccctcgacctggggtcg
gacaagcgggacacggaccaccggcaactggcccgggaggagcaggatgccgaggcggcg
cggctgttatacgttgccctcacccgggccgagttcctctgttatgtggcctggggcggc
atcaagggcgccttcgaatcgccgttgcgcaggctgctccacggcgaggactatagggac
gccaagtcgttcggcgccgcccctgaccaggaaatcctggccgccctcgccgggctggcc
ggcaaggcggcccgtgagggcggccccagccccattgccgccggattcatgccggcagac
acgcccgccccgccctattcccctgatcgggaaacgtcagcctccttcgcctgccgcggg
gtgcagcggactattgccgcccagtggcgcgtctccagcttcagcgccattaccgacggc
gccgaacgccacctccagccccgcgattacgatgccgtggccgcccacgacgctcccccg
gccatggcagagcccccggccggcacagacggcccgccggccgggttcggaaccgacctg
tccatcttcggctttccccgcggcgcagccgccggcacctgcctccatgagctgttcgag
caactcgatttcagcgccgtggagggggagtccctggagcggctctgccaaaccgttctg
ctgcgcaacggctatgacgggcgctggctgccggccgtgcagcgcatggtcatggacatc
gtcgccgccccgctcctctccgacgaacccggcttttccctctcgcgcctcaaaccgggt
tcgtggcaggtcgaaatggagtttttcctcccggtggccagcctgagcggcggccgcctg
gccgagctgttcgccgggctgctgagccccgaccggcacggcgggttcggagaaatcctg
gccgcgctccacgtccaggaaacccgcggcatgctccagggcttcatggacatggtcttc
gagcacaacggccgcttctacatcatcgactggaaatcgaatcacctgggaggccggccc
ggggattacagtgcaacaaagctcctggagcccatggcccgccacgcctatatcctccag
taccatctctacaccctggccctcgaccggctgctgcgcctgcgtctgcccgggtatgag
tacgacacccatttcggcggggccatctacgtatttttgcgggggatcgtcgccggctcc
gccgaatacggcatctatcgcgacaaaccgtcgcccctgttcatcagccgggcaaacgag
ctgctgttggggagcggcgaggcgggcttggcttga
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